Analysis of interatomic Contacts of Structural Units in PDB entry:
5KSW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KSW entry

There are 4 chains in PDB entry 5KSW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 5	LYS 310
B	MET 1	LEU 262
D	MET 1	LEU 262
C	ASN 5	SER 309

There are 42 helices in PDB entry 5KSW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	36	Right-handed 310
Helix 2	AA2	A	38	42	Right-handed 310
Helix 3	AA3	A	80	87	Right-handed alpha
Helix 4	AA4	A	87	96	Right-handed alpha
Helix 5	AA5	A	109	121	Right-handed alpha
Helix 6	AA6	A	148	161	Right-handed alpha
Helix 7	AA7	A	177	188	Right-handed alpha
Helix 8	AA8	A	222	224	Right-handed 310
Helix 9	AA9	A	225	238	Right-handed alpha
Helix 10	AB1	A	252	263	Right-handed alpha
Helix 11	AB2	A	271	276	Right-handed alpha
Helix 12	AB3	A	278	294	Right-handed alpha
Helix 13	AB4	A	298	308	Right-handed alpha
Helix 14	AB5	B	28	33	Right-handed 310
Helix 15	AB6	B	78	85	Right-handed alpha
Helix 16	AB7	B	122	135	Right-handed alpha
Helix 17	AB8	B	147	151	Right-handed 310
Helix 18	AB9	B	153	159	Right-handed alpha
Helix 19	AC1	B	179	186	Right-handed alpha
Helix 20	AC2	B	199	210	Right-handed alpha
Helix 21	AC3	B	258	260	Right-handed 310
Helix 22	AC4	D	28	33	Right-handed 310
Helix 23	AC5	D	78	84	Right-handed alpha
Helix 24	AC6	D	122	135	Right-handed alpha
Helix 25	AC7	D	147	151	Right-handed 310
Helix 26	AC8	D	153	159	Right-handed alpha
Helix 27	AC9	D	179	186	Right-handed alpha
Helix 28	AD1	D	199	210	Right-handed alpha
Helix 29	AD2	D	258	260	Right-handed 310
Helix 30	AD3	C	32	36	Right-handed 310
Helix 31	AD4	C	38	42	Right-handed 310
Helix 32	AD5	C	80	87	Right-handed alpha
Helix 33	AD6	C	87	96	Right-handed alpha
Helix 34	AD7	C	109	121	Right-handed alpha
Helix 35	AD8	C	148	161	Right-handed alpha
Helix 36	AD9	C	177	188	Right-handed alpha
Helix 37	AE1	C	222	224	Right-handed 310
Helix 38	AE2	C	225	238	Right-handed alpha
Helix 39	AE3	C	252	263	Right-handed alpha
Helix 40	AE4	C	271	276	Right-handed alpha
Helix 41	AE5	C	278	294	Right-handed alpha
Helix 42	AE6	C	298	308	Right-handed alpha

There are 12 sheets in PDB entry 5KSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	14	16	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	266	269	parallel
Strand 3	A	244	246	parallel
Strand 4	A	192	195	parallel
Strand 5	A	167	170	parallel
Strand 6	A	126	132	parallel
Strand 7	A	101	105	parallel
Strand 8	A	45	50	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	69	72	anti-parallel
Strand 3	A	218	221	anti-parallel
Strand 4	A	199	201	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	39	42	anti-parallel
Strand 3	B	91	98	anti-parallel
Strand 4	B	5	17	anti-parallel
Strand 5	B	20	26	anti-parallel
Strand 6	B	66	72	anti-parallel
Strand 7	B	59	61	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	177	first strand
Strand 2	B	163	169	parallel
Strand 3	B	138	145	parallel
Strand 4	B	112	118	parallel
Strand 5	B	193	197	parallel
Strand 6	B	216	219	parallel
Strand 7	B	254	256	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	245	247	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	17	first strand
Strand 2	D	20	26	anti-parallel
Strand 3	D	66	72	anti-parallel
Strand 4	D	53	61	anti-parallel
Strand 5	D	39	42	anti-parallel
Strand 6	D	91	98	anti-parallel
Strand 7	D	5	17	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	177	first strand
Strand 2	D	163	169	parallel
Strand 3	D	138	145	parallel
Strand 4	D	112	118	parallel
Strand 5	D	193	197	parallel
Strand 6	D	216	219	parallel
Strand 7	D	254	256	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	238	first strand
Strand 2	D	241	247	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	14	16	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	22	first strand
Strand 2	C	266	269	parallel
Strand 3	C	244	247	parallel
Strand 4	C	192	195	parallel
Strand 5	C	167	170	parallel
Strand 6	C	126	132	parallel
Strand 7	C	101	105	parallel
Strand 8	C	45	50	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	66	first strand
Strand 2	C	69	72	anti-parallel
Strand 3	C	218	221	anti-parallel
Strand 4	C	199	201	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KSW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KSW