Analysis of interatomic Contacts of Structural Units in PDB entry:
5KTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KTD entry

There is 1 chain in PDB entry 5KTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2HIS 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 5KTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 19Right-handed 310
Helix 2
AA2
A
20 29Right-handed alpha
Helix 3
AA3
A
43 60Right-handed alpha
Helix 4
AA4
A
106 121Right-handed alpha
Helix 5
AA5
A
136 147Right-handed alpha
Helix 6
AA6
A
164 170Right-handed alpha
Helix 7
AA7
A
174 179Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5KTD.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
64 70anti-parallel
Strand 3
A
75 86anti-parallel
Strand 4
A
91 99anti-parallel
Strand 5
A
127 133parallel
Strand 6
A
157 163anti-parallel
Strand 7
A
149 153anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il