Analysis of interatomic Contacts of Structural Units in PDB entry:
5KTY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KTY entry

There is 1 chain in PDB entry 5KTY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 181VAL 582
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5KTY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
182 197Right-handed alpha
Helix 2
AA2
A
205 217Right-handed alpha
Helix 3
AA3
A
226 231Right-handed alpha
Helix 4
AA4
A
247 259Right-handed alpha
Helix 5
AA5
A
266 274Right-handed alpha
Helix 6
AA6
A
283 288Right-handed alpha
Helix 7
AA7
A
302 316Right-handed alpha
Helix 8
AA8
A
325 333Right-handed alpha
Helix 9
AA9
A
334 336Right-handed 310
Helix 10
AB1
A
344 348Right-handed 310
Helix 11
AB2
A
359 373Right-handed alpha
Helix 12
AB3
A
373 384Right-handed alpha
Helix 13
AB4
A
385 390Right-handed alpha
Helix 14
AB5
A
394 397Right-handed 310
Helix 15
AB6
A
404 411Right-handed alpha
Helix 16
AB7
A
430 439Right-handed alpha
Helix 17
AB8
A
442 447Right-handed alpha
Helix 18
AB9
A
484 488Right-handed 310
Helix 19
AC1
A
502 515Right-handed alpha
Helix 20
AC2
A
541 549Right-handed alpha
Helix 21
AC3
A
567 579Right-handed alpha
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There are 3 sheets in PDB entry 5KTY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
399 401anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
357 358anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 464first strand
Strand 2
A
467 476anti-parallel
Strand 3
A
418 424parallel
Strand 4
A
491 497parallel
Strand 5
A
522 527parallel
Strand 6
A
555 556parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il