Analysis of interatomic Contacts of Structural Units in PDB entry:
5KU0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KU0 entry

There are 4 chains in PDB entry 5KU0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 PRO 57TYR 279
2
 SER 1PRO 269
3
 GLY 1ILE 231
7
 GLN 1HIS 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5KU0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
1
72 75Right-handed 310
Helix 2
AA2
1
76 82Right-handed alpha
Helix 3
AA3
1
111 114Right-handed 310
Helix 4
AA4
1
115 124Right-handed alpha
Helix 5
AA5
1
172 176Right-handed 310
Helix 6
AA6
2
35 37Right-handed 310
Helix 7
AA7
2
56 61Right-handed alpha
Helix 8
AA8
2
83 88Right-handed 310
Helix 9
AA9
2
89 98Right-handed alpha
Helix 10
AB1
2
144 149Right-handed alpha
Helix 11
AB2
2
177 181Right-handed 310
Helix 12
AB3
2
189 193Right-handed 310
Helix 13
AB4
3
42 46Right-handed 310
Helix 14
AB5
3
64 68Right-handed 310
Helix 15
AB6
3
92 97Right-handed 310
Helix 16
AB7
3
98 104Right-handed alpha
Helix 17
AB8
3
144 151Right-handed alpha
Helix 18
AB9
7
28 32Right-handed 310
Helix 19
AC1
7
87 91Right-handed 310
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There are 13 sheets in PDB entry 5KU0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
85 93first strand
Strand 2
1
253 268anti-parallel
Strand 3
1
127 142anti-parallel
Strand 4
1
192 196anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
85 93first strand
Strand 2
1
253 268anti-parallel
Strand 3
1
127 142anti-parallel
Strand 4
1
205 206anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
106 109first strand
Strand 2
1
239 244anti-parallel
Strand 3
1
154 160anti-parallel
Strand 4
1
182 186anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
14 16first strand
Strand 2
2
23 25anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
31 33first strand
Strand 2
2
205 210parallel
Strand 3
2
101 112anti-parallel
Strand 4
2
247 253anti-parallel
Strand 5
2
69 71anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
64 65first strand
Strand 2
2
247 253anti-parallel
Strand 3
2
101 112anti-parallel
Strand 4
2
255 261anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
78 79first strand
Strand 2
2
229 239anti-parallel
Strand 3
2
118 126anti-parallel
Strand 4
2
195 199anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
51 52first strand
Strand 2
3
209 216anti-parallel
Strand 3
3
70 71anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
51 52first strand
Strand 2
3
209 216anti-parallel
Strand 3
3
114 121anti-parallel
Strand 4
3
163 168anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
83 87first strand
Strand 2
3
188 194anti-parallel
Strand 3
3
129 134anti-parallel
Strand 4
3
152 157anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
177 178first strand
Strand 2
3
109 111anti-parallel
Strand 3
3
221 223anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
19 22first strand
Strand 2
7
79 83anti-parallel
Strand 3
7
68 72anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
45 51first strand
Strand 2
7
33 39anti-parallel
Strand 3
7
92 99anti-parallel
Strand 4
7
116 118anti-parallel
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