Analysis of interatomic Contacts of Structural Units in PDB entry:
5KU5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KU5 entry

There are 4 chains in PDB entry 5KU5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 38ASN 185
B
 VAL 39MET 184
C
 VAL 39ASN 185
D
 VAL 39ASP 182
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 5KU5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 63Right-handed alpha
Helix 2
AA2
A
68 82Right-handed alpha
Helix 3
AA3
A
106 114Right-handed 310
Helix 4
AA4
A
138 142Right-handed 310
Helix 5
AA5
A
173 184Right-handed alpha
Helix 6
AA6
B
40 63Right-handed alpha
Helix 7
AA7
B
68 84Right-handed alpha
Helix 8
AA8
B
107 112Right-handed alpha
Helix 9
AA9
B
173 184Right-handed alpha
Helix 10
AB1
C
40 63Right-handed alpha
Helix 11
AB2
C
68 81Right-handed alpha
Helix 12
AB3
C
106 114Right-handed 310
Helix 13
AB4
C
138 142Right-handed 310
Helix 14
AB5
C
173 184Right-handed alpha
Helix 15
AB6
D
40 62Right-handed alpha
Helix 16
AB7
D
68 81Right-handed alpha
Helix 17
AB8
D
106 111Right-handed 310
Helix 18
AB9
D
173 181Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5KU5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
162 172anti-parallel
Strand 4
A
148 159anti-parallel
Strand 5
A
126 128anti-parallel
Strand 6
A
115 116anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 100first strand
Strand 2
B
86 91anti-parallel
Strand 3
B
163 172anti-parallel
Strand 4
B
148 158anti-parallel
Strand 5
B
126 128anti-parallel
Strand 6
B
115 116anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 100first strand
Strand 2
C
86 91anti-parallel
Strand 3
C
163 172anti-parallel
Strand 4
C
148 158anti-parallel
Strand 5
C
126 128anti-parallel
Strand 6
C
115 116anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 100first strand
Strand 2
D
86 92anti-parallel
Strand 3
D
163 172anti-parallel
Strand 4
D
147 158anti-parallel
Strand 5
D
126 129anti-parallel
Strand 6
D
115 116anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il