Analysis of interatomic Contacts of Structural Units in PDB entry:
5KUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KUD entry

There is 1 chain in PDB entry 5KUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 12ASN 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5KUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
40 56Right-handed alpha
Helix 3
AA3
A
60 69Right-handed alpha
Helix 4
AA4
A
77 80Right-handed 310
Helix 5
AA5
A
81 101Right-handed alpha
Helix 6
AA6
A
101 121Right-handed alpha
Helix 7
AA7
A
129 143Right-handed alpha
Helix 8
AA8
A
147 189Right-handed alpha
Helix 9
AA9
A
196 216Right-handed alpha
Helix 10
AB1
A
219 243Right-handed alpha
Helix 11
AB2
A
256 261Right-handed alpha
Helix 12
AB3
A
266 269Right-handed 310
Helix 13
AB4
A
270 289Right-handed alpha
Helix 14
AB5
A
291 344Right-handed alpha
Helix 15
AB6
A
344 354Right-handed alpha
Helix 16
AB7
A
356 384Right-handed alpha
Helix 17
AB8
A
456 464Right-handed alpha
Helix 18
AB9
A
465 468Right-handed 310
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There are 2 sheets in PDB entry 5KUD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
36 37anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
263 264anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il