Analysis of interatomic Contacts of Structural Units in PDB entry:
5KUF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KUF entry

There are 4 chains in PDB entry 5KUF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	VAL 808
B	THR 2	VAL 808
C	THR 2	VAL 808
D	THR 2	VAL 808

There are128 helices in PDB entry 5KUF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	36	Right-handed alpha
Helix 2	AA2	A	56	69	Right-handed alpha
Helix 3	AA3	A	80	92	Right-handed alpha
Helix 4	AA4	A	93	95	Right-handed 310
Helix 5	AA5	A	121	136	Right-handed alpha
Helix 6	AA6	A	148	154	Right-handed alpha
Helix 7	AA7	A	154	159	Right-handed alpha
Helix 8	AA8	A	160	163	Right-handed 310
Helix 9	AA9	A	179	190	Right-handed alpha
Helix 10	AB1	A	200	214	Right-handed alpha
Helix 11	AB2	A	228	233	Right-handed 310
Helix 12	AB3	A	235	240	Right-handed alpha
Helix 13	AB4	A	255	270	Right-handed alpha
Helix 14	AB5	A	286	305	Right-handed alpha
Helix 15	AB6	A	324	335	Right-handed alpha
Helix 16	AB7	A	392	397	Right-handed alpha
Helix 17	AB8	A	423	426	Right-handed 310
Helix 18	AB9	A	432	444	Right-handed alpha
Helix 19	AC1	A	468	477	Right-handed alpha
Helix 20	AC2	A	532	545	Right-handed alpha
Helix 21	AC3	A	546	551	Right-handed alpha
Helix 22	AC4	A	600	629	Right-handed alpha
Helix 23	AC5	A	630	633	Right-handed 310
Helix 24	AC6	A	639	646	Right-handed alpha
Helix 25	AC7	A	657	665	Right-handed alpha
Helix 26	AC8	A	668	680	Right-handed alpha
Helix 27	AC9	A	681	686	Right-handed alpha
Helix 28	AD1	A	689	700	Right-handed alpha
Helix 29	AD2	A	707	718	Right-handed alpha
Helix 30	AD3	A	743	757	Right-handed alpha
Helix 31	AD4	A	758	768	Right-handed alpha
Helix 32	AD5	A	789	796	Right-handed alpha
Helix 33	AD6	A	796	803	Right-handed alpha
Helix 34	AD7	A	804	808	Right-handed 310
Helix 35	AD8	B	20	33	Right-handed alpha
Helix 36	AD9	B	34	36	Right-handed 310
Helix 37	AE1	B	57	70	Right-handed alpha
Helix 38	AE2	B	80	94	Right-handed alpha
Helix 39	AE3	B	121	137	Right-handed alpha
Helix 40	AE4	B	149	159	Right-handed alpha
Helix 41	AE5	B	180	191	Right-handed alpha
Helix 42	AE6	B	200	214	Right-handed alpha
Helix 43	AE7	B	228	233	Right-handed 310
Helix 44	AE8	B	255	270	Right-handed alpha
Helix 45	AE9	B	286	304	Right-handed alpha
Helix 46	AF1	B	324	333	Right-handed alpha
Helix 47	AF2	B	384	387	Right-handed 310
Helix 48	AF3	B	423	427	Right-handed 310
Helix 49	AF4	B	430	443	Right-handed alpha
Helix 50	AF5	B	468	477	Right-handed alpha
Helix 51	AF6	B	489	496	Right-handed alpha
Helix 52	AF7	B	520	525	Right-handed alpha
Helix 53	AF8	B	529	551	Right-handed alpha
Helix 54	AF9	B	600	634	Right-handed alpha
Helix 55	AG1	B	639	645	Right-handed alpha
Helix 56	AG2	B	657	665	Right-handed alpha
Helix 57	AG3	B	670	679	Right-handed alpha
Helix 58	AG4	B	681	686	Right-handed alpha
Helix 59	AG5	B	689	700	Right-handed alpha
Helix 60	AG6	B	707	717	Right-handed alpha
Helix 61	AG7	B	743	758	Right-handed alpha
Helix 62	AG8	B	758	768	Right-handed alpha
Helix 63	AG9	B	789	791	Right-handed 310
Helix 64	AH1	B	792	805	Right-handed alpha
Helix 65	AH2	C	20	36	Right-handed alpha
Helix 66	AH3	C	56	69	Right-handed alpha
Helix 67	AH4	C	80	92	Right-handed alpha
Helix 68	AH5	C	93	95	Right-handed 310
Helix 69	AH6	C	121	136	Right-handed alpha
Helix 70	AH7	C	148	154	Right-handed alpha
Helix 71	AH8	C	154	159	Right-handed alpha
Helix 72	AH9	C	160	163	Right-handed 310
Helix 73	AI1	C	179	190	Right-handed alpha
Helix 74	AI2	C	200	214	Right-handed alpha
Helix 75	AI3	C	228	233	Right-handed 310
Helix 76	AI4	C	235	240	Right-handed alpha
Helix 77	AI5	C	255	270	Right-handed alpha
Helix 78	AI6	C	286	305	Right-handed alpha
Helix 79	AI7	C	324	335	Right-handed alpha
Helix 80	AI8	C	392	397	Right-handed alpha
Helix 81	AI9	C	423	426	Right-handed 310
Helix 82	AJ1	C	432	444	Right-handed alpha
Helix 83	AJ2	C	468	477	Right-handed alpha
Helix 84	AJ3	C	532	545	Right-handed alpha
Helix 85	AJ4	C	546	551	Right-handed alpha
Helix 86	AJ5	C	600	629	Right-handed alpha
Helix 87	AJ6	C	630	633	Right-handed 310
Helix 88	AJ7	C	639	646	Right-handed alpha
Helix 89	AJ8	C	657	665	Right-handed alpha
Helix 90	AJ9	C	668	680	Right-handed alpha
Helix 91	AK1	C	681	686	Right-handed alpha
Helix 92	AK2	C	689	700	Right-handed alpha
Helix 93	AK3	C	707	718	Right-handed alpha
Helix 94	AK4	C	743	757	Right-handed alpha
Helix 95	AK5	C	758	768	Right-handed alpha
Helix 96	AK6	C	789	796	Right-handed alpha
Helix 97	AK7	C	796	803	Right-handed alpha
Helix 98	AK8	C	804	808	Right-handed 310
Helix 99	AK9	D	20	33	Right-handed alpha
Helix 100	AL1	D	34	36	Right-handed 310
Helix 101	AL2	D	57	70	Right-handed alpha
Helix 102	AL3	D	80	94	Right-handed alpha
Helix 103	AL4	D	121	137	Right-handed alpha
Helix 104	AL5	D	149	159	Right-handed alpha
Helix 105	AL6	D	180	191	Right-handed alpha
Helix 106	AL7	D	200	214	Right-handed alpha
Helix 107	AL8	D	228	233	Right-handed 310
Helix 108	AL9	D	255	270	Right-handed alpha
Helix 109	AM1	D	286	304	Right-handed alpha
Helix 110	AM2	D	324	333	Right-handed alpha
Helix 111	AM3	D	384	387	Right-handed 310
Helix 112	AM4	D	423	427	Right-handed 310
Helix 113	AM5	D	430	443	Right-handed alpha
Helix 114	AM6	D	468	477	Right-handed alpha
Helix 115	AM7	D	489	496	Right-handed alpha
Helix 116	AM8	D	520	525	Right-handed alpha
Helix 117	AM9	D	529	551	Right-handed alpha
Helix 118	AN1	D	600	634	Right-handed alpha
Helix 119	AN2	D	639	645	Right-handed alpha
Helix 120	AN3	D	657	665	Right-handed alpha
Helix 121	AN4	D	670	679	Right-handed alpha
Helix 122	AN5	D	681	686	Right-handed alpha
Helix 123	AN6	D	689	700	Right-handed alpha
Helix 124	AN7	D	707	717	Right-handed alpha
Helix 125	AN8	D	743	758	Right-handed alpha
Helix 126	AN9	D	758	768	Right-handed alpha
Helix 127	AO1	D	789	791	Right-handed 310
Helix 128	AO2	D	792	805	Right-handed alpha

There are 32 sheets in PDB entry 5KUF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	13	first strand
Strand 2	A	46	53	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	98	100	parallel
Strand 3	A	115	117	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	172	first strand
Strand 2	A	140	145	parallel
Strand 3	A	195	198	parallel
Strand 4	A	222	225	parallel
Strand 5	A	244	249	parallel
Strand 6	A	358	363	anti-parallel
Strand 7	A	368	375	anti-parallel
Strand 8	A	379	380	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	342	344	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	451	first strand
Strand 2	A	401	406	parallel
Strand 3	A	481	482	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	415	first strand
Strand 2	A	428	429	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	498	first strand
Strand 2	A	736	738	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	512	first strand
Strand 2	A	721	724	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	652	first strand
Strand 2	A	702	704	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	47	first strand
Strand 2	B	4	9	parallel
Strand 3	B	75	76	parallel
Strand 4	B	98	100	parallel
Strand 5	B	115	120	parallel
Strand 6	B	352	353	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	172	first strand
Strand 2	B	140	145	parallel
Strand 3	B	195	197	parallel
Strand 4	B	222	224	parallel
Strand 5	B	244	247	parallel
Strand 6	B	358	364	anti-parallel
Strand 7	B	367	375	anti-parallel
Strand 8	B	379	382	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	342	343	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	406	first strand
Strand 2	B	447	451	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	483	first strand
Strand 2	B	735	736	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	505	first strand
Strand 2	B	731	733	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	704	706	first strand
Strand 2	B	508	512	anti-parallel
Strand 3	B	721	724	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	13	first strand
Strand 2	C	46	53	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	98	100	parallel
Strand 3	C	115	117	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	172	first strand
Strand 2	C	140	145	parallel
Strand 3	C	195	198	parallel
Strand 4	C	222	225	parallel
Strand 5	C	244	249	parallel
Strand 6	C	358	363	anti-parallel
Strand 7	C	368	375	anti-parallel
Strand 8	C	379	380	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	339	first strand
Strand 2	C	342	344	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	446	451	first strand
Strand 2	C	401	406	parallel
Strand 3	C	481	482	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	414	415	first strand
Strand 2	C	428	429	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	736	738	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	509	512	first strand
Strand 2	C	721	724	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	652	first strand
Strand 2	C	702	704	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	47	first strand
Strand 2	D	4	9	parallel
Strand 3	D	75	76	parallel
Strand 4	D	98	100	parallel
Strand 5	D	115	120	parallel
Strand 6	D	352	353	parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	172	first strand
Strand 2	D	140	145	parallel
Strand 3	D	195	197	parallel
Strand 4	D	222	224	parallel
Strand 5	D	244	247	parallel
Strand 6	D	358	364	anti-parallel
Strand 7	D	367	375	anti-parallel
Strand 8	D	379	382	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	342	343	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	406	first strand
Strand 2	D	447	451	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	482	483	first strand
Strand 2	D	735	736	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	503	505	first strand
Strand 2	D	731	733	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	704	706	first strand
Strand 2	D	508	512	anti-parallel
Strand 3	D	721	724	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KUF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KUF