Analysis of interatomic Contacts of Structural Units in PDB entry:
5KUH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KUH entry

There are 4 chains in PDB entry 5KUH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	GLY 770
B	THR 2	GLY 770
C	THR 2	GLY 770
D	THR 2	GLY 770

There are104 helices in PDB entry 5KUH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	36	Right-handed alpha
Helix 2	AA2	A	56	71	Right-handed alpha
Helix 3	AA3	A	80	94	Right-handed alpha
Helix 4	AA4	A	121	136	Right-handed alpha
Helix 5	AA5	A	148	154	Right-handed alpha
Helix 6	AA6	A	154	159	Right-handed alpha
Helix 7	AA7	A	160	163	Right-handed 310
Helix 8	AA8	A	176	179	Right-handed 310
Helix 9	AA9	A	180	190	Right-handed alpha
Helix 10	AB1	A	200	214	Right-handed alpha
Helix 11	AB2	A	229	233	Right-handed 310
Helix 12	AB3	A	255	270	Right-handed alpha
Helix 13	AB4	A	286	305	Right-handed alpha
Helix 14	AB5	A	324	334	Right-handed alpha
Helix 15	AB6	A	423	426	Right-handed 310
Helix 16	AB7	A	430	444	Right-handed alpha
Helix 17	AB8	A	468	476	Right-handed alpha
Helix 18	AB9	A	489	494	Right-handed alpha
Helix 19	AC1	A	639	645	Right-handed alpha
Helix 20	AC2	A	657	666	Right-handed alpha
Helix 21	AC3	A	668	681	Right-handed alpha
Helix 22	AC4	A	681	686	Right-handed alpha
Helix 23	AC5	A	689	700	Right-handed alpha
Helix 24	AC6	A	708	716	Right-handed alpha
Helix 25	AC7	A	742	757	Right-handed alpha
Helix 26	AC8	A	758	769	Right-handed alpha
Helix 27	AC9	B	20	36	Right-handed alpha
Helix 28	AD1	B	56	71	Right-handed alpha
Helix 29	AD2	B	80	94	Right-handed alpha
Helix 30	AD3	B	121	136	Right-handed alpha
Helix 31	AD4	B	148	154	Right-handed alpha
Helix 32	AD5	B	154	159	Right-handed alpha
Helix 33	AD6	B	160	163	Right-handed 310
Helix 34	AD7	B	176	179	Right-handed 310
Helix 35	AD8	B	180	190	Right-handed alpha
Helix 36	AD9	B	200	214	Right-handed alpha
Helix 37	AE1	B	229	233	Right-handed 310
Helix 38	AE2	B	255	270	Right-handed alpha
Helix 39	AE3	B	286	305	Right-handed alpha
Helix 40	AE4	B	324	335	Right-handed alpha
Helix 41	AE5	B	423	426	Right-handed 310
Helix 42	AE6	B	430	444	Right-handed alpha
Helix 43	AE7	B	468	476	Right-handed alpha
Helix 44	AE8	B	489	494	Right-handed alpha
Helix 45	AE9	B	639	645	Right-handed alpha
Helix 46	AF1	B	657	666	Right-handed alpha
Helix 47	AF2	B	668	681	Right-handed alpha
Helix 48	AF3	B	681	686	Right-handed alpha
Helix 49	AF4	B	689	700	Right-handed alpha
Helix 50	AF5	B	708	716	Right-handed alpha
Helix 51	AF6	B	742	757	Right-handed alpha
Helix 52	AF7	B	758	769	Right-handed alpha
Helix 53	AF8	C	20	36	Right-handed alpha
Helix 54	AF9	C	56	71	Right-handed alpha
Helix 55	AG1	C	80	94	Right-handed alpha
Helix 56	AG2	C	121	136	Right-handed alpha
Helix 57	AG3	C	148	154	Right-handed alpha
Helix 58	AG4	C	154	159	Right-handed alpha
Helix 59	AG5	C	160	163	Right-handed 310
Helix 60	AG6	C	176	179	Right-handed 310
Helix 61	AG7	C	180	190	Right-handed alpha
Helix 62	AG8	C	200	214	Right-handed alpha
Helix 63	AG9	C	229	233	Right-handed 310
Helix 64	AH1	C	255	270	Right-handed alpha
Helix 65	AH2	C	286	305	Right-handed alpha
Helix 66	AH3	C	324	334	Right-handed alpha
Helix 67	AH4	C	423	426	Right-handed 310
Helix 68	AH5	C	430	444	Right-handed alpha
Helix 69	AH6	C	468	476	Right-handed alpha
Helix 70	AH7	C	489	494	Right-handed alpha
Helix 71	AH8	C	639	645	Right-handed alpha
Helix 72	AH9	C	657	666	Right-handed alpha
Helix 73	AI1	C	668	681	Right-handed alpha
Helix 74	AI2	C	681	686	Right-handed alpha
Helix 75	AI3	C	689	700	Right-handed alpha
Helix 76	AI4	C	708	716	Right-handed alpha
Helix 77	AI5	C	742	757	Right-handed alpha
Helix 78	AI6	C	758	769	Right-handed alpha
Helix 79	AI7	D	20	36	Right-handed alpha
Helix 80	AI8	D	56	71	Right-handed alpha
Helix 81	AI9	D	80	94	Right-handed alpha
Helix 82	AJ1	D	121	136	Right-handed alpha
Helix 83	AJ2	D	148	154	Right-handed alpha
Helix 84	AJ3	D	154	159	Right-handed alpha
Helix 85	AJ4	D	160	163	Right-handed 310
Helix 86	AJ5	D	176	179	Right-handed 310
Helix 87	AJ6	D	180	190	Right-handed alpha
Helix 88	AJ7	D	200	214	Right-handed alpha
Helix 89	AJ8	D	229	233	Right-handed 310
Helix 90	AJ9	D	255	270	Right-handed alpha
Helix 91	AK1	D	286	305	Right-handed alpha
Helix 92	AK2	D	324	335	Right-handed alpha
Helix 93	AK3	D	423	426	Right-handed 310
Helix 94	AK4	D	430	444	Right-handed alpha
Helix 95	AK5	D	468	476	Right-handed alpha
Helix 96	AK6	D	489	494	Right-handed alpha
Helix 97	AK7	D	639	645	Right-handed alpha
Helix 98	AK8	D	657	666	Right-handed alpha
Helix 99	AK9	D	668	681	Right-handed alpha
Helix 100	AL1	D	681	686	Right-handed alpha
Helix 101	AL2	D	689	700	Right-handed alpha
Helix 102	AL3	D	708	716	Right-handed alpha
Helix 103	AL4	D	742	757	Right-handed alpha
Helix 104	AL5	D	758	769	Right-handed alpha

There are 32 sheets in PDB entry 5KUH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	53	first strand
Strand 2	A	3	13	parallel
Strand 3	A	75	76	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	115	120	parallel
Strand 3	A	352	353	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	172	first strand
Strand 2	A	140	145	parallel
Strand 3	A	194	198	parallel
Strand 4	A	222	225	parallel
Strand 5	A	244	249	parallel
Strand 6	A	358	364	anti-parallel
Strand 7	A	367	375	anti-parallel
Strand 8	A	379	380	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	339	first strand
Strand 2	A	342	345	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	451	first strand
Strand 2	A	402	406	parallel
Strand 3	A	481	487	parallel
Strand 4	A	731	738	anti-parallel
Strand 5	A	496	498	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	451	first strand
Strand 2	A	402	406	parallel
Strand 3	A	481	487	parallel
Strand 4	A	731	738	anti-parallel
Strand 5	A	503	505	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	415	first strand
Strand 2	A	428	429	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	652	first strand
Strand 2	A	702	707	parallel
Strand 3	A	507	512	anti-parallel
Strand 4	A	721	724	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	53	first strand
Strand 2	B	3	13	parallel
Strand 3	B	75	76	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	115	120	parallel
Strand 3	B	352	353	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	172	first strand
Strand 2	B	140	145	parallel
Strand 3	B	194	198	parallel
Strand 4	B	222	225	parallel
Strand 5	B	244	249	parallel
Strand 6	B	358	364	anti-parallel
Strand 7	B	367	375	anti-parallel
Strand 8	B	379	380	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	339	first strand
Strand 2	B	342	345	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	451	first strand
Strand 2	B	402	406	parallel
Strand 3	B	481	487	parallel
Strand 4	B	731	738	anti-parallel
Strand 5	B	496	498	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	451	first strand
Strand 2	B	402	406	parallel
Strand 3	B	481	487	parallel
Strand 4	B	731	738	anti-parallel
Strand 5	B	503	505	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	415	first strand
Strand 2	B	428	429	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	652	first strand
Strand 2	B	702	707	parallel
Strand 3	B	507	512	anti-parallel
Strand 4	B	721	724	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	53	first strand
Strand 2	C	3	13	parallel
Strand 3	C	75	76	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	115	120	parallel
Strand 3	C	352	353	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	172	first strand
Strand 2	C	140	145	parallel
Strand 3	C	194	198	parallel
Strand 4	C	222	225	parallel
Strand 5	C	244	249	parallel
Strand 6	C	358	364	anti-parallel
Strand 7	C	367	375	anti-parallel
Strand 8	C	379	380	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	339	first strand
Strand 2	C	342	345	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	451	first strand
Strand 2	C	402	406	parallel
Strand 3	C	481	487	parallel
Strand 4	C	731	738	anti-parallel
Strand 5	C	496	498	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	451	first strand
Strand 2	C	402	406	parallel
Strand 3	C	481	487	parallel
Strand 4	C	731	738	anti-parallel
Strand 5	C	503	505	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	414	415	first strand
Strand 2	C	428	429	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	652	first strand
Strand 2	C	702	707	parallel
Strand 3	C	507	512	anti-parallel
Strand 4	C	721	724	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	53	first strand
Strand 2	D	3	13	parallel
Strand 3	D	75	76	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	115	120	parallel
Strand 3	D	352	353	parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	172	first strand
Strand 2	D	140	145	parallel
Strand 3	D	194	198	parallel
Strand 4	D	222	225	parallel
Strand 5	D	244	249	parallel
Strand 6	D	358	364	anti-parallel
Strand 7	D	367	375	anti-parallel
Strand 8	D	379	380	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	339	first strand
Strand 2	D	342	345	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	447	451	first strand
Strand 2	D	402	406	parallel
Strand 3	D	481	487	parallel
Strand 4	D	731	738	anti-parallel
Strand 5	D	496	498	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	447	451	first strand
Strand 2	D	402	406	parallel
Strand 3	D	481	487	parallel
Strand 4	D	731	738	anti-parallel
Strand 5	D	503	505	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	414	415	first strand
Strand 2	D	428	429	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	650	652	first strand
Strand 2	D	702	707	parallel
Strand 3	D	507	512	anti-parallel
Strand 4	D	721	724	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KUH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KUH