Analysis of interatomic Contacts of Structural Units in PDB entry:
5KUT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KUT entry

There are 3 chains in PDB entry 5KUT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 408SER 587
B
 MET 408HIS 578
C
 THR 412PRO 577
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5KUT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
428 437Right-handed alpha
Helix 2
AA2
A
475 480Right-handed 310
Helix 3
AA3
A
499 512Right-handed alpha
Helix 4
AA4
A
538 546Right-handed alpha
Helix 5
AA5
A
564 576Right-handed alpha
Helix 6
AA6
A
577 580Right-handed 310
Helix 7
AA7
B
428 437Right-handed alpha
Helix 8
AA8
B
475 480Right-handed 310
Helix 9
AA9
B
499 512Right-handed alpha
Helix 10
AB1
B
538 546Right-handed alpha
Helix 11
AB2
B
564 576Right-handed alpha
Helix 12
AB3
C
428 437Right-handed alpha
Helix 13
AB4
C
475 480Right-handed 310
Helix 14
AB5
C
499 512Right-handed alpha
Helix 15
AB6
C
538 546Right-handed alpha
Helix 16
AB7
C
564 576Right-handed alpha
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There are 3 sheets in PDB entry 5KUT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 460first strand
Strand 2
A
463 473anti-parallel
Strand 3
A
416 423parallel
Strand 4
A
488 494parallel
Strand 5
A
519 524parallel
Strand 6
A
552 553parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
453 460first strand
Strand 2
B
463 473anti-parallel
Strand 3
B
416 423parallel
Strand 4
B
488 494parallel
Strand 5
B
519 524parallel
Strand 6
B
552 553parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
453 460first strand
Strand 2
C
463 473anti-parallel
Strand 3
C
416 423parallel
Strand 4
C
488 494parallel
Strand 5
C
519 524parallel
Strand 6
C
552 553parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il