Analysis of interatomic Contacts of Structural Units in PDB entry:
5KVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KVA entry

There are 2 chains in PDB entry 5KVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 35LYS 261
B
 HIS 34LYS 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5KVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 52Right-handed alpha
Helix 2
AA2
A
53 56Right-handed 310
Helix 3
AA3
A
57 68Right-handed alpha
Helix 4
AA4
A
72 76Right-handed 310
Helix 5
AA5
A
78 93Right-handed alpha
Helix 6
AA6
A
105 115Right-handed alpha
Helix 7
AA7
A
127 141Right-handed alpha
Helix 8
AA8
A
143 145Right-handed 310
Helix 9
AA9
A
153 164Right-handed alpha
Helix 10
AB1
A
165 168Right-handed 310
Helix 11
AB2
A
179 181Right-handed 310
Helix 12
AB3
A
182 193Right-handed alpha
Helix 13
AB4
A
206 213Right-handed 310
Helix 14
AB5
A
220 239Right-handed alpha
Helix 15
AB6
B
40 52Right-handed alpha
Helix 16
AB7
B
53 56Right-handed 310
Helix 17
AB8
B
57 69Right-handed alpha
Helix 18
AB9
B
72 76Right-handed 310
Helix 19
AC1
B
78 93Right-handed alpha
Helix 20
AC2
B
105 115Right-handed alpha
Helix 21
AC3
B
127 141Right-handed alpha
Helix 22
AC4
B
143 145Right-handed 310
Helix 23
AC5
B
153 163Right-handed alpha
Helix 24
AC6
B
164 168Right-handed 310
Helix 25
AC7
B
179 181Right-handed 310
Helix 26
AC8
B
182 193Right-handed alpha
Helix 27
AC9
B
206 213Right-handed 310
Helix 28
AD1
B
220 239Right-handed alpha
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There are 2 sheets in PDB entry 5KVA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 151first strand
Strand 2
A
120 125parallel
Strand 3
A
96 100parallel
Strand 4
A
171 176parallel
Strand 5
A
194 203parallel
Strand 6
A
254 259anti-parallel
Strand 7
A
243 248anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 151first strand
Strand 2
B
120 125parallel
Strand 3
B
96 100parallel
Strand 4
B
171 176parallel
Strand 5
B
194 203parallel
Strand 6
B
254 259anti-parallel
Strand 7
B
243 248anti-parallel
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