Analysis of interatomic Contacts of Structural Units in PDB entry:
5KVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KVC entry

There are 2 chains in PDB entry 5KVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1GLU 254
B
 HIS 1GLU 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5KVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
32 36Right-handed 310
Helix 3
AA3
A
37 48Right-handed alpha
Helix 4
AA4
A
58 71Right-handed alpha
Helix 5
AA5
A
88 92Right-handed 310
Helix 6
AA6
A
93 105Right-handed alpha
Helix 7
AA7
A
105 123Right-handed alpha
Helix 8
AA8
A
142 164Right-handed alpha
Helix 9
AA9
A
165 167Right-handed 310
Helix 10
AB1
A
188 193Right-handed alpha
Helix 11
AB2
A
195 206Right-handed alpha
Helix 12
AB3
A
213 226Right-handed alpha
Helix 13
AB4
A
229 233Right-handed 310
Helix 14
AB5
B
13 24Right-handed alpha
Helix 15
AB6
B
32 36Right-handed 310
Helix 16
AB7
B
37 48Right-handed alpha
Helix 17
AB8
B
58 71Right-handed alpha
Helix 18
AB9
B
88 92Right-handed 310
Helix 19
AC1
B
93 105Right-handed alpha
Helix 20
AC2
B
105 123Right-handed alpha
Helix 21
AC3
B
142 164Right-handed alpha
Helix 22
AC4
B
165 167Right-handed 310
Helix 23
AC5
B
188 193Right-handed alpha
Helix 24
AC6
B
195 206Right-handed alpha
Helix 25
AC7
B
213 226Right-handed alpha
Helix 26
AC8
B
229 233Right-handed 310
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There are 2 sheets in PDB entry 5KVC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
27 30parallel
Strand 3
A
3 6parallel
Strand 4
A
75 79parallel
Strand 5
A
126 130parallel
Strand 6
A
170 175parallel
Strand 7
A
236 239parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
27 30parallel
Strand 3
B
3 6parallel
Strand 4
B
75 79parallel
Strand 5
B
126 130parallel
Strand 6
B
170 175parallel
Strand 7
B
236 239parallel
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