Analysis of interatomic Contacts of Structural Units in PDB entry:
5KVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KVM entry

There are 3 chains in PDB entry 5KVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 28LEU 382
B
 THR 383SER 391
C
 SER 5THR 99
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5KVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
175 192Right-handed alpha
Helix 2
AA2
A
193 196Right-handed 310
Helix 3
AA3
A
201 219Right-handed alpha
Helix 4
AA4
A
241 247Right-handed 310
Helix 5
AA5
A
270 275Right-handed alpha
Helix 6
AA6
A
307 309Right-handed 310
Helix 7
AA7
C
44 48Right-handed 310
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There are 6 sheets in PDB entry 5KVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 113first strand
Strand 2
A
100 105anti-parallel
Strand 3
A
86 95anti-parallel
Strand 4
A
32 40anti-parallel
Strand 5
A
136 142anti-parallel
Strand 6
A
149 150anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
64 69parallel
Strand 3
A
56 60anti-parallel
Strand 4
A
156 160anti-parallel
Strand 5
A
124 126anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 230first strand
Strand 2
A
233 239anti-parallel
Strand 3
A
287 294anti-parallel
Strand 4
A
311 317anti-parallel
Strand 5
B
384 390anti-parallel
Strand 6
A
343 350anti-parallel
Strand 7
A
360 362anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 252first strand
Strand 2
A
262 269anti-parallel
Strand 3
A
329 335anti-parallel
Strand 4
A
374 379anti-parallel
Strand 5
A
366 370anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 15first strand
Strand 2
C
20 24anti-parallel
Strand 3
C
59 62anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 54first strand
Strand 2
C
33 40anti-parallel
Strand 3
C
71 78anti-parallel
Strand 4
C
93 97anti-parallel
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