Analysis of interatomic Contacts of Structural Units in PDB entry:
5KVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KVQ entry

There are 2 chains in PDB entry 5KVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5ASN 358
B
 ALA 4PRO 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5KVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 23Right-handed alpha
Helix 2
AA2
A
24 26Right-handed 310
Helix 3
AA3
A
42 53Right-handed alpha
Helix 4
AA4
A
59 63Right-handed 310
Helix 5
AA5
A
76 80Right-handed 310
Helix 6
AA6
A
82 93Right-handed alpha
Helix 7
AA7
A
104 119Right-handed alpha
Helix 8
AA8
A
127 130Right-handed 310
Helix 9
AA9
A
131 148Right-handed alpha
Helix 10
AB1
A
163 176Right-handed alpha
Helix 11
AB2
A
178 182Right-handed 310
Helix 12
AB3
A
285 292Right-handed alpha
Helix 13
AB4
A
292 310Right-handed alpha
Helix 14
AB5
A
315 318Right-handed 310
Helix 15
AB6
A
319 338Right-handed alpha
Helix 16
AB7
A
349 352Right-handed 310
Helix 17
AB8
A
353 358Right-handed alpha
Helix 18
AB9
B
17 24Right-handed alpha
Helix 19
AC1
B
25 27Right-handed 310
Helix 20
AC2
B
42 53Right-handed alpha
Helix 21
AC3
B
59 63Right-handed 310
Helix 22
AC4
B
76 80Right-handed 310
Helix 23
AC5
B
82 93Right-handed alpha
Helix 24
AC6
B
104 119Right-handed alpha
Helix 25
AC7
B
127 130Right-handed 310
Helix 26
AC8
B
131 148Right-handed alpha
Helix 27
AC9
B
163 176Right-handed alpha
Helix 28
AD1
B
178 182Right-handed 310
Helix 29
AD2
B
285 292Right-handed alpha
Helix 30
AD3
B
292 310Right-handed alpha
Helix 31
AD4
B
315 318Right-handed 310
Helix 32
AD5
B
319 338Right-handed alpha
Helix 33
AD6
B
349 354Right-handed 310
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There are 6 sheets in PDB entry 5KVQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
32 38parallel
Strand 3
A
8 13parallel
Strand 4
A
69 72parallel
Strand 5
A
96 100parallel
Strand 6
A
122 125parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 189first strand
Strand 2
A
193 200anti-parallel
Strand 3
A
203 210anti-parallel
Strand 4
A
154 159parallel
Strand 5
A
226 232anti-parallel
Strand 6
A
235 239anti-parallel
Strand 7
A
246 250anti-parallel
Strand 8
A
277 280anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
341 342parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
32 38parallel
Strand 3
B
8 13parallel
Strand 4
B
69 72parallel
Strand 5
B
96 100parallel
Strand 6
B
122 125parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 189first strand
Strand 2
B
193 200anti-parallel
Strand 3
B
203 210anti-parallel
Strand 4
B
154 159parallel
Strand 5
B
227 232anti-parallel
Strand 6
B
235 239anti-parallel
Strand 7
B
246 250anti-parallel
Strand 8
B
277 280anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 213first strand
Strand 2
B
341 342parallel
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