Analysis of interatomic Contacts of Structural Units in PDB entry:
5KVU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KVU entry

There are 4 chains in PDB entry 5KVU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 5	VAL 743
B	PRO 6	VAL 743
C	GLN 5	VAL 743
D	GLN 5	ALA 742

There are140 helices in PDB entry 5KVU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	33	Right-handed alpha
Helix 2	AA2	A	34	36	Right-handed 310
Helix 3	AA3	A	45	54	Right-handed alpha
Helix 4	AA4	A	55	58	Right-handed 310
Helix 5	AA5	A	66	75	Right-handed alpha
Helix 6	AA6	A	91	105	Right-handed alpha
Helix 7	AA7	A	119	130	Right-handed alpha
Helix 8	AA8	A	136	141	Right-handed alpha
Helix 9	AA9	A	150	160	Right-handed alpha
Helix 10	AB1	A	182	187	Right-handed alpha
Helix 11	AB2	A	230	249	Right-handed alpha
Helix 12	AB3	A	266	277	Right-handed alpha
Helix 13	AB4	A	277	282	Right-handed alpha
Helix 14	AB5	A	284	291	Right-handed alpha
Helix 15	AB6	A	294	296	Right-handed 310
Helix 16	AB7	A	297	308	Right-handed alpha
Helix 17	AB8	A	313	324	Right-handed alpha
Helix 18	AB9	A	325	327	Right-handed 310
Helix 19	AC1	A	350	361	Right-handed alpha
Helix 20	AC2	A	385	399	Right-handed alpha
Helix 21	AC3	A	419	426	Right-handed 310
Helix 22	AC4	A	465	484	Right-handed alpha
Helix 23	AC5	A	495	509	Right-handed alpha
Helix 24	AC6	A	510	512	Right-handed 310
Helix 25	AC7	A	523	536	Right-handed alpha
Helix 26	AC8	A	546	563	Right-handed alpha
Helix 27	AC9	A	564	568	Right-handed 310
Helix 28	AD1	A	589	600	Right-handed alpha
Helix 29	AD2	A	606	625	Right-handed alpha
Helix 30	AD3	A	626	646	Right-handed alpha
Helix 31	AD4	A	658	677	Right-handed alpha
Helix 32	AD5	A	680	697	Right-handed alpha
Helix 33	AD6	A	697	708	Right-handed alpha
Helix 34	AD7	A	722	731	Right-handed alpha
Helix 35	AD8	A	733	742	Right-handed alpha
Helix 36	AD9	B	14	33	Right-handed alpha
Helix 37	AE1	B	34	36	Right-handed 310
Helix 38	AE2	B	45	54	Right-handed alpha
Helix 39	AE3	B	55	58	Right-handed 310
Helix 40	AE4	B	66	75	Right-handed alpha
Helix 41	AE5	B	91	104	Right-handed alpha
Helix 42	AE6	B	118	129	Right-handed alpha
Helix 43	AE7	B	130	132	Right-handed 310
Helix 44	AE8	B	136	141	Right-handed alpha
Helix 45	AE9	B	150	160	Right-handed alpha
Helix 46	AF1	B	182	187	Right-handed alpha
Helix 47	AF2	B	230	249	Right-handed alpha
Helix 48	AF3	B	257	261	Right-handed 310
Helix 49	AF4	B	266	277	Right-handed alpha
Helix 50	AF5	B	277	283	Right-handed alpha
Helix 51	AF6	B	284	292	Right-handed alpha
Helix 52	AF7	B	294	297	Right-handed 310
Helix 53	AF8	B	298	306	Right-handed alpha
Helix 54	AF9	B	310	325	Right-handed alpha
Helix 55	AG1	B	326	328	Right-handed 310
Helix 56	AG2	B	336	339	Right-handed 310
Helix 57	AG3	B	350	361	Right-handed alpha
Helix 58	AG4	B	385	399	Right-handed alpha
Helix 59	AG5	B	419	424	Right-handed 310
Helix 60	AG6	B	465	484	Right-handed alpha
Helix 61	AG7	B	495	510	Right-handed alpha
Helix 62	AG8	B	523	536	Right-handed alpha
Helix 63	AG9	B	546	563	Right-handed alpha
Helix 64	AH1	B	564	568	Right-handed 310
Helix 65	AH2	B	589	600	Right-handed alpha
Helix 66	AH3	B	606	625	Right-handed alpha
Helix 67	AH4	B	626	646	Right-handed alpha
Helix 68	AH5	B	658	676	Right-handed alpha
Helix 69	AH6	B	680	697	Right-handed alpha
Helix 70	AH7	B	699	708	Right-handed alpha
Helix 71	AH8	B	722	731	Right-handed alpha
Helix 72	AH9	B	733	742	Right-handed alpha
Helix 73	AI1	C	14	33	Right-handed alpha
Helix 74	AI2	C	34	36	Right-handed 310
Helix 75	AI3	C	45	54	Right-handed alpha
Helix 76	AI4	C	55	58	Right-handed 310
Helix 77	AI5	C	66	75	Right-handed alpha
Helix 78	AI6	C	91	104	Right-handed alpha
Helix 79	AI7	C	118	129	Right-handed alpha
Helix 80	AI8	C	136	141	Right-handed alpha
Helix 81	AI9	C	150	160	Right-handed alpha
Helix 82	AJ1	C	182	187	Right-handed alpha
Helix 83	AJ2	C	230	249	Right-handed alpha
Helix 84	AJ3	C	267	277	Right-handed alpha
Helix 85	AJ4	C	277	291	Right-handed alpha
Helix 86	AJ5	C	294	297	Right-handed 310
Helix 87	AJ6	C	298	306	Right-handed alpha
Helix 88	AJ7	C	310	324	Right-handed alpha
Helix 89	AJ8	C	325	328	Right-handed 310
Helix 90	AJ9	C	350	361	Right-handed alpha
Helix 91	AK1	C	385	399	Right-handed alpha
Helix 92	AK2	C	419	426	Right-handed 310
Helix 93	AK3	C	465	484	Right-handed alpha
Helix 94	AK4	C	495	509	Right-handed alpha
Helix 95	AK5	C	510	512	Right-handed 310
Helix 96	AK6	C	523	536	Right-handed alpha
Helix 97	AK7	C	546	563	Right-handed alpha
Helix 98	AK8	C	564	567	Right-handed 310
Helix 99	AK9	C	589	600	Right-handed alpha
Helix 100	AL1	C	606	625	Right-handed alpha
Helix 101	AL2	C	626	646	Right-handed alpha
Helix 102	AL3	C	658	677	Right-handed alpha
Helix 103	AL4	C	680	697	Right-handed alpha
Helix 104	AL5	C	697	707	Right-handed alpha
Helix 105	AL6	C	722	731	Right-handed alpha
Helix 106	AL7	C	733	742	Right-handed alpha
Helix 107	AL8	D	14	33	Right-handed alpha
Helix 108	AL9	D	34	36	Right-handed 310
Helix 109	AM1	D	45	54	Right-handed alpha
Helix 110	AM2	D	55	58	Right-handed 310
Helix 111	AM3	D	66	75	Right-handed alpha
Helix 112	AM4	D	91	104	Right-handed alpha
Helix 113	AM5	D	118	129	Right-handed alpha
Helix 114	AM6	D	130	132	Right-handed 310
Helix 115	AM7	D	136	141	Right-handed alpha
Helix 116	AM8	D	150	160	Right-handed alpha
Helix 117	AM9	D	230	248	Right-handed alpha
Helix 118	AN1	D	267	277	Right-handed alpha
Helix 119	AN2	D	277	284	Right-handed alpha
Helix 120	AN3	D	284	291	Right-handed alpha
Helix 121	AN4	D	294	296	Right-handed 310
Helix 122	AN5	D	297	306	Right-handed alpha
Helix 123	AN6	D	310	325	Right-handed alpha
Helix 124	AN7	D	326	328	Right-handed 310
Helix 125	AN8	D	350	361	Right-handed alpha
Helix 126	AN9	D	385	399	Right-handed alpha
Helix 127	AO1	D	419	424	Right-handed 310
Helix 128	AO2	D	465	484	Right-handed alpha
Helix 129	AO3	D	495	510	Right-handed alpha
Helix 130	AO4	D	523	536	Right-handed alpha
Helix 131	AO5	D	546	563	Right-handed alpha
Helix 132	AO6	D	564	568	Right-handed 310
Helix 133	AO7	D	589	600	Right-handed alpha
Helix 134	AO8	D	606	624	Right-handed alpha
Helix 135	AO9	D	626	646	Right-handed alpha
Helix 136	AP1	D	658	677	Right-handed alpha
Helix 137	AP2	D	680	697	Right-handed alpha
Helix 138	AP3	D	697	708	Right-handed alpha
Helix 139	AP4	D	722	731	Right-handed alpha
Helix 140	AP5	D	733	741	Right-handed alpha

There are 24 sheets in PDB entry 5KVU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	43	first strand
Strand 2	A	7	12	parallel
Strand 3	A	81	84	parallel
Strand 4	A	579	582	parallel
Strand 5	A	569	573	anti-parallel
Strand 6	A	145	148	anti-parallel
Strand 7	A	411	413	anti-parallel
Strand 8	A	542	545	parallel
Strand 9	A	487	490	parallel
Strand 10	A	519	522	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	372	378	parallel
Strand 3	A	251	254	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	372	378	parallel
Strand 3	A	364	366	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	191	first strand
Strand 2	A	223	229	anti-parallel
Strand 3	A	458	464	anti-parallel
Strand 4	A	428	430	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	218	first strand
Strand 2	A	196	204	anti-parallel
Strand 3	A	435	441	anti-parallel
Strand 4	A	447	453	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	43	first strand
Strand 2	B	7	12	parallel
Strand 3	B	81	84	parallel
Strand 4	B	579	582	parallel
Strand 5	B	569	573	anti-parallel
Strand 6	B	145	148	anti-parallel
Strand 7	B	411	413	anti-parallel
Strand 8	B	542	545	parallel
Strand 9	B	487	490	parallel
Strand 10	B	519	522	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	372	378	parallel
Strand 3	B	251	254	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	372	378	parallel
Strand 3	B	364	366	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	191	first strand
Strand 2	B	223	229	anti-parallel
Strand 3	B	458	464	anti-parallel
Strand 4	B	428	430	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	218	first strand
Strand 2	B	196	204	anti-parallel
Strand 3	B	435	441	anti-parallel
Strand 4	B	447	453	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	43	first strand
Strand 2	C	7	12	parallel
Strand 3	C	81	84	parallel
Strand 4	C	579	583	parallel
Strand 5	C	569	573	anti-parallel
Strand 6	C	145	148	anti-parallel
Strand 7	C	411	413	anti-parallel
Strand 8	C	542	545	parallel
Strand 9	C	487	490	parallel
Strand 10	C	519	522	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	176	first strand
Strand 2	C	375	378	parallel
Strand 3	C	251	254	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	191	first strand
Strand 2	C	223	229	anti-parallel
Strand 3	C	458	464	anti-parallel
Strand 4	C	428	430	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	218	first strand
Strand 2	C	196	204	anti-parallel
Strand 3	C	435	441	anti-parallel
Strand 4	C	447	453	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	335	first strand
Strand 2	C	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	372	373	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	43	first strand
Strand 2	D	7	12	parallel
Strand 3	D	81	84	parallel
Strand 4	D	579	582	parallel
Strand 5	D	569	573	anti-parallel
Strand 6	D	145	148	anti-parallel
Strand 7	D	411	413	anti-parallel
Strand 8	D	542	545	parallel
Strand 9	D	487	490	parallel
Strand 10	D	519	522	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	176	first strand
Strand 2	D	372	378	parallel
Strand 3	D	251	254	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	176	first strand
Strand 2	D	372	378	parallel
Strand 3	D	364	366	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	191	first strand
Strand 2	D	223	229	anti-parallel
Strand 3	D	458	464	anti-parallel
Strand 4	D	428	430	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	217	first strand
Strand 2	D	197	204	anti-parallel
Strand 3	D	435	441	anti-parallel
Strand 4	D	447	453	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	335	first strand
Strand 2	D	340	341	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KVU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KVU