Analysis of interatomic Contacts of Structural Units in PDB entry:
5KVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KVV entry

There are 2 chains in PDB entry 5KVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ILE 329
B
 SER 4ILE 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5KVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 27Right-handed alpha
Helix 2
AA2
A
44 46Right-handed 310
Helix 3
AA3
A
47 60Right-handed alpha
Helix 4
AA4
A
74 79Right-handed alpha
Helix 5
AA5
A
98 121Right-handed alpha
Helix 6
AA6
A
133 144Right-handed alpha
Helix 7
AA7
A
149 151Right-handed 310
Helix 8
AA8
A
157 173Right-handed alpha
Helix 9
AA9
A
175 177Right-handed 310
Helix 10
AB1
A
205 211Right-handed alpha
Helix 11
AB2
A
212 219Right-handed alpha
Helix 12
AB3
A
219 226Right-handed alpha
Helix 13
AB4
A
226 236Right-handed alpha
Helix 14
AB5
A
239 257Right-handed alpha
Helix 15
AB6
A
272 276Right-handed 310
Helix 16
AB7
A
302 326Right-handed alpha
Helix 17
AB8
B
15 28Right-handed alpha
Helix 18
AB9
B
44 46Right-handed 310
Helix 19
AC1
B
47 60Right-handed alpha
Helix 20
AC2
B
74 79Right-handed alpha
Helix 21
AC3
B
98 121Right-handed alpha
Helix 22
AC4
B
133 144Right-handed alpha
Helix 23
AC5
B
149 151Right-handed 310
Helix 24
AC6
B
157 173Right-handed alpha
Helix 25
AC7
B
175 177Right-handed 310
Helix 26
AC8
B
206 211Right-handed alpha
Helix 27
AC9
B
212 219Right-handed alpha
Helix 28
AD1
B
219 226Right-handed alpha
Helix 29
AD2
B
226 236Right-handed alpha
Helix 30
AD3
B
240 257Right-handed alpha
Helix 31
AD4
B
272 276Right-handed 310
Helix 32
AD5
B
302 326Right-handed alpha
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There are 8 sheets in PDB entry 5KVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 72first strand
Strand 2
A
37 42parallel
Strand 3
A
6 11parallel
Strand 4
A
84 87parallel
Strand 5
A
126 129parallel
Strand 6
A
153 155parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
200 201anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
193 195anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 269first strand
Strand 2
A
281 289anti-parallel
Strand 3
A
292 295anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 72first strand
Strand 2
B
37 42parallel
Strand 3
B
6 11parallel
Strand 4
B
84 87parallel
Strand 5
B
126 129parallel
Strand 6
B
153 155parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
200 201anti-parallel
Strand 3
B
204 205anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 185first strand
Strand 2
B
193 195anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 269first strand
Strand 2
B
281 289anti-parallel
Strand 3
B
292 295anti-parallel
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