Analysis of interatomic Contacts of Structural Units in PDB entry:
5KW6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KW6 entry

There are 3 chains in PDB entry 5KW6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 114THR 314
B
 MET 113LEU 310
C
 C 10 U 29
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5KW6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
117 129Right-handed alpha
Helix 2
AA2
A
141 150Right-handed alpha
Helix 3
AA3
A
151 153Right-handed 310
Helix 4
AA4
A
179 191Right-handed alpha
Helix 5
AA5
A
211 223Right-handed alpha
Helix 6
AA6
A
238 247Right-handed alpha
Helix 7
AA7
A
248 250Right-handed 310
Helix 8
AA8
A
276 288Right-handed alpha
Helix 9
AA9
B
117 129Right-handed alpha
Helix 10
AB1
B
141 150Right-handed alpha
Helix 11
AB2
B
151 153Right-handed 310
Helix 12
AB3
B
179 191Right-handed alpha
Helix 13
AB4
B
211 223Right-handed alpha
Helix 14
AB5
B
238 247Right-handed alpha
Helix 15
AB6
B
248 250Right-handed 310
Helix 16
AB7
B
276 288Right-handed alpha
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There are 8 sheets in PDB entry 5KW6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 160first strand
Strand 2
A
172 177anti-parallel
Strand 3
A
130 134anti-parallel
Strand 4
A
201 203anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
198 199anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 259first strand
Strand 2
A
266 274anti-parallel
Strand 3
A
227 231anti-parallel
Strand 4
A
298 301anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
295 296anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 160first strand
Strand 2
B
172 177anti-parallel
Strand 3
B
130 134anti-parallel
Strand 4
B
201 203anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 195first strand
Strand 2
B
198 199anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 259first strand
Strand 2
B
266 274anti-parallel
Strand 3
B
227 231anti-parallel
Strand 4
B
298 301anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
295 296anti-parallel
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