Analysis of interatomic Contacts of Structural Units in PDB entry:
5KWA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KWA entry

There are 2 chains in PDB entry 5KWA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 97THR 601
B
 PRO 97THR 601
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5KWA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
131 135Right-handed 310
Helix 2
AA2
A
235 242Right-handed alpha
Helix 3
AA3
A
257 269Right-handed alpha
Helix 4
AA4
A
269 274Right-handed alpha
Helix 5
AA5
A
274 281Right-handed alpha
Helix 6
AA6
A
298 313Right-handed alpha
Helix 7
AA7
A
334 339Right-handed alpha
Helix 8
AA8
A
344 361Right-handed alpha
Helix 9
AA9
A
393 404Right-handed alpha
Helix 10
AB1
A
417 421Right-handed 310
Helix 11
AB2
A
422 427Right-handed 310
Helix 12
AB3
A
441 450Right-handed alpha
Helix 13
AB4
A
460 466Right-handed alpha
Helix 14
AB5
A
470 487Right-handed alpha
Helix 15
AB6
A
490 492Right-handed 310
Helix 16
AB7
A
511 514Right-handed 310
Helix 17
AB8
A
515 538Right-handed alpha
Helix 18
AB9
A
543 560Right-handed alpha
Helix 19
AC1
A
566 578Right-handed alpha
Helix 20
AC2
B
250 254Right-handed 310
Helix 21
AC3
B
257 269Right-handed alpha
Helix 22
AC4
B
269 274Right-handed alpha
Helix 23
AC5
B
274 281Right-handed alpha
Helix 24
AC6
B
298 313Right-handed alpha
Helix 25
AC7
B
334 339Right-handed alpha
Helix 26
AC8
B
344 361Right-handed alpha
Helix 27
AC9
B
372 376Right-handed 310
Helix 28
AD1
B
393 403Right-handed alpha
Helix 29
AD2
B
417 421Right-handed 310
Helix 30
AD3
B
422 427Right-handed 310
Helix 31
AD4
B
441 451Right-handed alpha
Helix 32
AD5
B
460 466Right-handed alpha
Helix 33
AD6
B
470 488Right-handed alpha
Helix 34
AD7
B
511 514Right-handed 310
Helix 35
AD8
B
515 538Right-handed alpha
Helix 36
AD9
B
543 558Right-handed alpha
Helix 37
AE1
B
566 578Right-handed alpha
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There are 7 sheets in PDB entry 5KWA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 125first strand
Strand 2
A
112 117anti-parallel
Strand 3
A
101 107anti-parallel
Strand 4
A
140 142anti-parallel
Strand 5
A
151 152anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 167first strand
Strand 2
A
173 177anti-parallel
Strand 3
A
183 188anti-parallel
Strand 4
A
228 232parallel
Strand 5
A
219 223anti-parallel
Strand 6
A
159 167anti-parallel
Strand 7
B
183 188anti-parallel
Strand 8
B
228 232parallel
Strand 9
B
219 223anti-parallel
Strand 10
B
160 167anti-parallel
Strand 11
B
173 177anti-parallel
Strand 12
B
183 188anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 333first strand
Strand 2
A
366 371parallel
Strand 3
A
409 415parallel
Strand 4
A
288 292parallel
Strand 5
A
433 436parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 509first strand
Strand 2
A
494 500anti-parallel
Strand 3
A
581 586anti-parallel
Strand 4
A
597 599anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 125first strand
Strand 2
B
112 117anti-parallel
Strand 3
B
101 107anti-parallel
Strand 4
B
140 142anti-parallel
Strand 5
B
151 152anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 333first strand
Strand 2
B
366 371parallel
Strand 3
B
409 415parallel
Strand 4
B
288 292parallel
Strand 5
B
433 436parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
505 509first strand
Strand 2
B
494 500anti-parallel
Strand 3
B
581 586anti-parallel
Strand 4
B
598 599anti-parallel
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