Analysis of interatomic Contacts of Structural Units in PDB entry:
5KWG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KWG entry

There are 2 chains in PDB entry 5KWG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 THR 1VAL 575
A
 GLY 237GLU 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5KWG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
16 23Right-handed alpha
Helix 2
AA2
C
24 29Right-handed alpha
Helix 3
AA3
C
49 53Right-handed 310
Helix 4
AA4
C
85 88Right-handed 310
Helix 5
AA5
C
146 151Right-handed 310
Helix 6
AA6
C
186 190Right-handed 310
Helix 7
AA7
C
339 343Right-handed 310
Helix 8
AA8
C
376 380Right-handed 310
Helix 9
AA9
C
400 404Right-handed 310
Helix 10
AB1
C
414 418Right-handed 310
Helix 11
AB2
C
459 464Right-handed alpha
Helix 12
AB3
C
478 483Right-handed alpha
Helix 13
AB4
C
493 497Right-handed 310
Helix 14
AB5
C
502 506Right-handed 310
Helix 15
AB6
A
310 316Right-handed alpha
Helix 16
AB7
A
354 358Right-handed 310
Helix 17
AB8
A
415 420Right-handed alpha
Helix 18
AB9
A
432 436Right-handed 310
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There are 13 sheets in PDB entry 5KWG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
34 35parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 41first strand
Strand 2
C
62 65parallel
Strand 3
C
90 95parallel
Strand 4
C
130 134parallel
Strand 5
C
160 162parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 222first strand
Strand 2
C
230 233anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
250 252first strand
Strand 2
C
259 261anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
298 300first strand
Strand 2
C
308 310anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
320 321first strand
Strand 2
C
348 349parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
424 426first strand
Strand 2
C
444 449parallel
Strand 3
C
471 473parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
517 519first strand
Strand 2
C
512 514anti-parallel
Strand 3
C
537 540parallel
Strand 4
C
531 534anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
304 306anti-parallel
Strand 3
A
288 289anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
318 322anti-parallel
Strand 3
A
336 337anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 294first strand
Strand 2
A
300 301anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
363 372anti-parallel
Strand 3
A
404 412anti-parallel
Strand 4
A
391 393anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 383first strand
Strand 2
A
423 426anti-parallel
Strand 3
A
440 441anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il