Analysis of interatomic Contacts of Structural Units in PDB entry:
5KWK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KWK entry

There are 2 chains in PDB entry 5KWK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 94VAL 558
B
 ASP 95VAL 558
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5KWK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
94 98Right-handed 310
Helix 2
AA2
A
108 111Right-handed 310
Helix 3
AA3
A
112 117Right-handed alpha
Helix 4
AA4
A
129 147Right-handed alpha
Helix 5
AA5
A
150 159Right-handed alpha
Helix 6
AA6
A
181 199Right-handed alpha
Helix 7
AA7
A
210 215Right-handed alpha
Helix 8
AA8
A
230 236Right-handed 310
Helix 9
AA9
A
246 253Right-handed alpha
Helix 10
AB1
A
276 281Right-handed 310
Helix 11
AB2
A
282 290Right-handed alpha
Helix 12
AB3
A
303 310Right-handed 310
Helix 13
AB4
A
312 321Right-handed alpha
Helix 14
AB5
A
323 325Right-handed 310
Helix 15
AB6
A
326 336Right-handed alpha
Helix 16
AB7
A
339 354Right-handed alpha
Helix 17
AB8
A
375 389Right-handed alpha
Helix 18
AB9
A
420 433Right-handed alpha
Helix 19
AC1
A
459 471Right-handed alpha
Helix 20
AC2
A
482 493Right-handed alpha
Helix 21
AC3
A
537 541Right-handed 310
Helix 22
AC4
B
97 101Right-handed 310
Helix 23
AC5
B
112 121Right-handed alpha
Helix 24
AC6
B
129 147Right-handed alpha
Helix 25
AC7
B
150 157Right-handed alpha
Helix 26
AC8
B
158 162Right-handed 310
Helix 27
AC9
B
181 199Right-handed alpha
Helix 28
AD1
B
210 215Right-handed alpha
Helix 29
AD2
B
232 236Right-handed 310
Helix 30
AD3
B
246 254Right-handed alpha
Helix 31
AD4
B
276 281Right-handed 310
Helix 32
AD5
B
282 291Right-handed alpha
Helix 33
AD6
B
303 308Right-handed alpha
Helix 34
AD7
B
312 321Right-handed alpha
Helix 35
AD8
B
323 325Right-handed 310
Helix 36
AD9
B
326 336Right-handed alpha
Helix 37
AE1
B
339 354Right-handed alpha
Helix 38
AE2
B
375 389Right-handed alpha
Helix 39
AE3
B
420 433Right-handed alpha
Helix 40
AE4
B
456 471Right-handed alpha
Helix 41
AE5
B
482 493Right-handed alpha
Helix 42
AE6
B
537 541Right-handed 310
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There are 7 sheets in PDB entry 5KWK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
173 176parallel
Strand 3
A
294 299parallel
Strand 4
A
264 269parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 444first strand
Strand 2
A
410 416parallel
Strand 3
A
359 364parallel
Strand 4
A
475 479parallel
Strand 5
A
497 499parallel
Strand 6
A
512 514anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 529first strand
Strand 2
A
534 535anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 547first strand
Strand 2
A
555 557anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 205first strand
Strand 2
B
173 176parallel
Strand 3
B
294 299parallel
Strand 4
B
264 269parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
440 444first strand
Strand 2
B
410 416parallel
Strand 3
B
359 364parallel
Strand 4
B
475 479parallel
Strand 5
B
497 499parallel
Strand 6
B
512 514anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
545 547first strand
Strand 2
B
555 557anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il