Analysis of interatomic Contacts of Structural Units in PDB entry:
5KWV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KWV entry

There are 2 chains in PDB entry 5KWV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0PRO 278
B
 HIS 0GLY 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5KWV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 17Right-handed alpha
Helix 2
AA2
A
30 44Right-handed alpha
Helix 3
AA3
A
70 80Right-handed alpha
Helix 4
AA4
A
90 95Right-handed alpha
Helix 5
AA5
A
107 112Right-handed 310
Helix 6
AA6
A
113 118Right-handed alpha
Helix 7
AA7
A
120 137Right-handed alpha
Helix 8
AA8
A
147 161Right-handed alpha
Helix 9
AA9
A
182 188Right-handed 310
Helix 10
AB1
A
189 196Right-handed alpha
Helix 11
AB2
A
197 212Right-handed alpha
Helix 12
AB3
A
216 231Right-handed alpha
Helix 13
AB4
B
6 15Right-handed alpha
Helix 14
AB5
B
30 42Right-handed alpha
Helix 15
AB6
B
70 80Right-handed alpha
Helix 16
AB7
B
90 95Right-handed alpha
Helix 17
AB8
B
107 118Right-handed 310
Helix 18
AB9
B
120 137Right-handed alpha
Helix 19
AC1
B
147 161Right-handed alpha
Helix 20
AC2
B
182 188Right-handed 310
Helix 21
AC3
B
189 196Right-handed alpha
Helix 22
AC4
B
197 212Right-handed alpha
Helix 23
AC5
B
216 231Right-handed alpha
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There are 5 sheets in PDB entry 5KWV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
85 87parallel
Strand 3
A
46 51parallel
Strand 4
A
20 25parallel
Strand 5
A
140 144parallel
Strand 6
A
166 170parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
B
103 105anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 242first strand
Strand 2
A
255 264anti-parallel
Strand 3
A
267 276anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
85 87parallel
Strand 3
B
46 51parallel
Strand 4
B
20 25parallel
Strand 5
B
140 144parallel
Strand 6
B
166 170parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 242first strand
Strand 2
B
256 264anti-parallel
Strand 3
B
267 275anti-parallel
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