Analysis of interatomic Contacts of Structural Units in PDB entry:
5KWY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KWY entry

There are 4 chains in PDB entry 5KWY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 400	ARG 607
B	VAL 378	LEU 613
C	GLU 20	ALA 152
D	GLU 20	LEU 151

There are 23 helices in PDB entry 5KWY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	432	435	Right-handed 310
Helix 2	AA2	A	436	452	Right-handed alpha
Helix 3	AA3	A	465	467	Right-handed 310
Helix 4	AA4	A	483	489	Right-handed 310
Helix 5	AA5	A	491	497	Right-handed alpha
Helix 6	AA6	A	508	517	Right-handed alpha
Helix 7	AA7	A	542	545	Right-handed 310
Helix 8	AA8	A	554	558	Right-handed 310
Helix 9	AA9	A	573	593	Right-handed alpha
Helix 10	AB1	B	379	381	Right-handed 310
Helix 11	AB2	B	382	398	Right-handed alpha
Helix 12	AB3	B	432	435	Right-handed 310
Helix 13	AB4	B	436	452	Right-handed alpha
Helix 14	AB5	B	464	468	Right-handed alpha
Helix 15	AB6	B	483	489	Right-handed 310
Helix 16	AB7	B	491	496	Right-handed alpha
Helix 17	AB8	B	508	517	Right-handed alpha
Helix 18	AB9	B	542	545	Right-handed 310
Helix 19	AC1	B	554	558	Right-handed 310
Helix 20	AC2	B	573	593	Right-handed alpha
Helix 21	AC3	B	606	612	Right-handed alpha
Helix 22	AC4	C	91	95	Right-handed 310
Helix 23	AC5	D	91	95	Right-handed 310

There are 14 sheets in PDB entry 5KWY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	547	548	first strand
Strand 2	A	560	568	anti-parallel
Strand 3	A	403	411	anti-parallel
Strand 4	A	600	604	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	429	431	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	457	first strand
Strand 2	A	460	463	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	500	first strand
Strand 2	A	505	507	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	547	548	first strand
Strand 2	B	560	567	anti-parallel
Strand 3	B	404	411	anti-parallel
Strand 4	B	600	604	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	429	431	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	457	first strand
Strand 2	B	460	463	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	500	first strand
Strand 2	B	505	507	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	26	first strand
Strand 2	C	137	148	anti-parallel
Strand 3	C	47	50	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	26	first strand
Strand 2	C	137	148	anti-parallel
Strand 3	C	123	131	anti-parallel
Strand 4	C	71	78	anti-parallel
Strand 5	C	81	84	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	40	first strand
Strand 2	C	53	63	anti-parallel
Strand 3	C	105	115	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	26	first strand
Strand 2	D	137	148	anti-parallel
Strand 3	D	47	50	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	26	first strand
Strand 2	D	137	148	anti-parallel
Strand 3	D	123	131	anti-parallel
Strand 4	D	71	78	anti-parallel
Strand 5	D	81	85	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	40	first strand
Strand 2	D	53	63	anti-parallel
Strand 3	D	106	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KWY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KWY