Analysis of interatomic Contacts of Structural Units in PDB entry:
5KXQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KXQ entry

There are 4 chains in PDB entry 5KXQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 33	MET 383
B	SER 33	MET 383
C	SER 33	MET 383
D	SER 33	LEU 327

There are 74 helices in PDB entry 5KXQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	67	Right-handed alpha
Helix 2	AA2	A	91	96	Right-handed alpha
Helix 3	AA3	A	98	104	Right-handed 310
Helix 4	AA4	A	110	117	Right-handed alpha
Helix 5	AA5	A	117	122	Right-handed alpha
Helix 6	AA6	A	123	126	Right-handed 310
Helix 7	AA7	A	133	137	Right-handed alpha
Helix 8	AA8	A	152	159	Right-handed alpha
Helix 9	AA9	A	176	178	Right-handed 310
Helix 10	AB1	A	179	187	Right-handed alpha
Helix 11	AB2	A	207	217	Right-handed 310
Helix 12	AB3	A	220	235	Right-handed alpha
Helix 13	AB4	A	247	255	Right-handed alpha
Helix 14	AB5	A	284	289	Right-handed alpha
Helix 15	AB6	A	291	307	Right-handed alpha
Helix 16	AB7	A	320	326	Right-handed alpha
Helix 17	AB8	A	341	351	Right-handed alpha
Helix 18	AB9	A	361	374	Right-handed alpha
Helix 19	AC1	B	48	67	Right-handed alpha
Helix 20	AC2	B	91	96	Right-handed alpha
Helix 21	AC3	B	98	104	Right-handed 310
Helix 22	AC4	B	110	117	Right-handed alpha
Helix 23	AC5	B	117	122	Right-handed alpha
Helix 24	AC6	B	123	126	Right-handed 310
Helix 25	AC7	B	133	137	Right-handed alpha
Helix 26	AC8	B	152	159	Right-handed alpha
Helix 27	AC9	B	176	178	Right-handed 310
Helix 28	AD1	B	179	187	Right-handed alpha
Helix 29	AD2	B	207	217	Right-handed 310
Helix 30	AD3	B	220	235	Right-handed alpha
Helix 31	AD4	B	247	255	Right-handed alpha
Helix 32	AD5	B	284	289	Right-handed alpha
Helix 33	AD6	B	291	307	Right-handed alpha
Helix 34	AD7	B	320	327	Right-handed alpha
Helix 35	AD8	B	341	351	Right-handed alpha
Helix 36	AD9	B	361	374	Right-handed alpha
Helix 37	AE1	C	48	67	Right-handed alpha
Helix 38	AE2	C	91	96	Right-handed alpha
Helix 39	AE3	C	98	104	Right-handed 310
Helix 40	AE4	C	110	117	Right-handed alpha
Helix 41	AE5	C	117	122	Right-handed alpha
Helix 42	AE6	C	123	126	Right-handed 310
Helix 43	AE7	C	133	137	Right-handed alpha
Helix 44	AE8	C	152	159	Right-handed alpha
Helix 45	AE9	C	176	178	Right-handed 310
Helix 46	AF1	C	179	187	Right-handed alpha
Helix 47	AF2	C	207	217	Right-handed 310
Helix 48	AF3	C	220	235	Right-handed alpha
Helix 49	AF4	C	247	255	Right-handed alpha
Helix 50	AF5	C	256	256	Right-handed 310
Helix 51	AF6	C	269	273	Right-handed 310
Helix 52	AF7	C	284	289	Right-handed alpha
Helix 53	AF8	C	291	307	Right-handed alpha
Helix 54	AF9	C	320	326	Right-handed alpha
Helix 55	AG1	C	341	351	Right-handed alpha
Helix 56	AG2	C	361	374	Right-handed alpha
Helix 57	AG3	D	48	67	Right-handed alpha
Helix 58	AG4	D	91	96	Right-handed alpha
Helix 59	AG5	D	98	103	Right-handed alpha
Helix 60	AG6	D	110	117	Right-handed alpha
Helix 61	AG7	D	117	122	Right-handed alpha
Helix 62	AG8	D	123	126	Right-handed 310
Helix 63	AG9	D	134	137	Right-handed 310
Helix 64	AH1	D	152	159	Right-handed alpha
Helix 65	AH2	D	176	178	Right-handed 310
Helix 66	AH3	D	179	187	Right-handed alpha
Helix 67	AH4	D	207	217	Right-handed 310
Helix 68	AH5	D	220	235	Right-handed alpha
Helix 69	AH6	D	247	255	Right-handed alpha
Helix 70	AH7	D	284	289	Right-handed alpha
Helix 71	AH8	D	291	307	Right-handed alpha
Helix 72	AH9	D	320	326	Right-handed alpha
Helix 73	AI1	D	341	351	Right-handed alpha
Helix 74	AI2	D	361	374	Right-handed alpha

There are 16 sheets in PDB entry 5KXQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	69	72	parallel
Strand 3	A	39	42	parallel
Strand 4	A	194	197	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	77	first strand
Strand 2	A	88	90	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	166	170	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	310	315	parallel
Strand 3	A	239	244	parallel
Strand 4	A	354	357	parallel
Strand 5	A	378	380	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	109	first strand
Strand 2	B	69	72	parallel
Strand 3	B	39	42	parallel
Strand 4	B	194	197	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	B	88	90	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	166	170	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	310	315	parallel
Strand 3	B	239	244	parallel
Strand 4	B	354	357	parallel
Strand 5	B	378	380	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	109	first strand
Strand 2	C	69	72	parallel
Strand 3	C	39	42	parallel
Strand 4	C	194	197	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	77	first strand
Strand 2	C	88	90	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	132	first strand
Strand 2	C	166	170	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	335	first strand
Strand 2	C	310	315	parallel
Strand 3	C	239	244	parallel
Strand 4	C	354	357	parallel
Strand 5	C	378	380	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	109	first strand
Strand 2	D	69	72	parallel
Strand 3	D	39	42	parallel
Strand 4	D	194	197	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	88	90	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	166	170	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	335	first strand
Strand 2	D	310	315	parallel
Strand 3	D	239	244	parallel
Strand 4	D	354	357	parallel
Strand 5	D	378	380	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KXQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KXQ