Analysis of interatomic Contacts of Structural Units in PDB entry:
5KYA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KYA entry

There are 4 chains in PDB entry 5KYA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 218ASP 477
B
 GLU 297GLN 543
E
 VAL 218ASP 477
F
 GLU 297GLN 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 5KYA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
221 245Right-handed alpha
Helix 2
AA2
A
246 249Right-handed 310
Helix 3
AA3
A
262 288Right-handed alpha
Helix 4
AA4
A
291 295Right-handed 310
Helix 5
AA5
A
296 319Right-handed alpha
Helix 6
AA6
A
336 343Right-handed alpha
Helix 7
AA7
A
346 364Right-handed alpha
Helix 8
AA8
A
366 379Right-handed alpha
Helix 9
AA9
A
388 411Right-handed alpha
Helix 10
AB1
A
416 445Right-handed alpha
Helix 11
AB2
A
450 458Right-handed alpha
Helix 12
AB3
A
470 477Right-handed alpha
Helix 13
AB4
B
300 310Right-handed alpha
Helix 14
AB5
B
336 356Right-handed alpha
Helix 15
AB6
B
364 388Right-handed alpha
Helix 16
AB7
B
405 411Right-handed alpha
Helix 17
AB8
B
413 424Right-handed alpha
Helix 18
AB9
B
424 431Right-handed alpha
Helix 19
AC1
B
434 447Right-handed alpha
Helix 20
AC2
B
456 479Right-handed alpha
Helix 21
AC3
B
484 491Right-handed alpha
Helix 22
AC4
B
492 513Right-handed alpha
Helix 23
AC5
B
520 526Right-handed alpha
Helix 24
AC6
B
535 542Right-handed alpha
Helix 25
AC7
E
221 245Right-handed alpha
Helix 26
AC8
E
246 249Right-handed 310
Helix 27
AC9
E
261 288Right-handed alpha
Helix 28
AD1
E
291 295Right-handed 310
Helix 29
AD2
E
296 319Right-handed alpha
Helix 30
AD3
E
336 343Right-handed alpha
Helix 31
AD4
E
346 364Right-handed alpha
Helix 32
AD5
E
366 379Right-handed alpha
Helix 33
AD6
E
388 411Right-handed alpha
Helix 34
AD7
E
416 445Right-handed alpha
Helix 35
AD8
E
450 458Right-handed alpha
Helix 36
AD9
E
470 477Right-handed alpha
Helix 37
AE1
F
300 310Right-handed alpha
Helix 38
AE2
F
336 356Right-handed alpha
Helix 39
AE3
F
364 388Right-handed alpha
Helix 40
AE4
F
405 411Right-handed alpha
Helix 41
AE5
F
413 424Right-handed alpha
Helix 42
AE6
F
424 431Right-handed alpha
Helix 43
AE7
F
434 447Right-handed alpha
Helix 44
AE8
F
456 479Right-handed alpha
Helix 45
AE9
F
484 491Right-handed alpha
Helix 46
AF1
F
492 512Right-handed alpha
Helix 47
AF2
F
520 526Right-handed alpha
Helix 48
AF3
F
535 542Right-handed alpha
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There are 4 sheets in PDB entry 5KYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
326 329anti-parallel
Strand 3
A
333 335anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 396first strand
Strand 2
B
402 404anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
320 321first strand
Strand 2
E
326 329anti-parallel
Strand 3
E
333 335anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
394 396first strand
Strand 2
F
402 404anti-parallel
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