Analysis of interatomic Contacts of Structural Units in PDB entry:
5KYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KYD entry

There are 2 chains in PDB entry 5KYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 1GLY 76
A
 HIS 210ILE 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5KYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
22 35Right-handed alpha
Helix 2
AA2
D
37 39Right-handed 310
Helix 3
AA3
D
55 60Right-handed 310
Helix 4
AA4
A
224 234Right-handed alpha
Helix 5
AA5
A
235 244Right-handed alpha
Helix 6
AA6
A
255 270Right-handed alpha
Helix 7
AA7
A
276 284Right-handed alpha
Helix 8
AA8
A
287 293Right-handed alpha
Helix 9
AA9
A
295 312Right-handed alpha
Helix 10
AB1
A
318 325Right-handed alpha
Helix 11
AB2
A
359 368Right-handed alpha
Helix 12
AB3
A
374 378Right-handed 310
Helix 13
AB4
A
382 384Right-handed 310
Helix 14
AB5
A
434 437Right-handed 310
Helix 15
AB6
A
489 494Right-handed alpha
Helix 16
AB7
A
495 498Right-handed 310
Helix 17
AB8
A
523 528Right-handed alpha
Helix 18
AB9
A
532 536Right-handed 310
Helix 19
AC1
A
537 548Right-handed alpha
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There are 6 sheets in PDB entry 5KYD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 347first strand
Strand 2
A
326 334anti-parallel
Strand 3
A
389 397anti-parallel
Strand 4
A
371 373anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 352first strand
Strand 2
A
401 406parallel
Strand 3
A
511 520anti-parallel
Strand 4
A
447 458anti-parallel
Strand 5
A
430 432anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 352first strand
Strand 2
A
401 406parallel
Strand 3
A
511 520anti-parallel
Strand 4
A
447 458anti-parallel
Strand 5
A
463 469anti-parallel
Strand 6
A
477 481anti-parallel
Strand 7
A
484 488anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
A
386 387anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 412first strand
Strand 2
A
417 420anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il