Analysis of interatomic Contacts of Structural Units in PDB entry:
5KYE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KYE entry

There are 4 chains in PDB entry 5KYE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 209	GLN 553
D	MET 1	GLY 76
B	THR 211	ARG 549
C	MET 1	GLY 76

There are 38 helices in PDB entry 5KYE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	222	234	Right-handed alpha
Helix 2	AA2	A	235	244	Right-handed alpha
Helix 3	AA3	A	255	270	Right-handed alpha
Helix 4	AA4	A	276	283	Right-handed alpha
Helix 5	AA5	A	286	292	Right-handed 310
Helix 6	AA6	A	295	312	Right-handed alpha
Helix 7	AA7	A	318	325	Right-handed alpha
Helix 8	AA8	A	359	369	Right-handed alpha
Helix 9	AA9	A	374	378	Right-handed 310
Helix 10	AB1	A	382	384	Right-handed 310
Helix 11	AB2	A	434	437	Right-handed 310
Helix 12	AB3	A	489	494	Right-handed alpha
Helix 13	AB4	A	495	498	Right-handed 310
Helix 14	AB5	A	523	528	Right-handed alpha
Helix 15	AB6	A	532	536	Right-handed 310
Helix 16	AB7	A	537	552	Right-handed alpha
Helix 17	AB8	D	22	35	Right-handed alpha
Helix 18	AB9	D	37	41	Right-handed 310
Helix 19	AC1	D	56	60	Right-handed 310
Helix 20	AC2	B	222	234	Right-handed alpha
Helix 21	AC3	B	235	244	Right-handed alpha
Helix 22	AC4	B	255	270	Right-handed alpha
Helix 23	AC5	B	276	283	Right-handed alpha
Helix 24	AC6	B	287	292	Right-handed 310
Helix 25	AC7	B	295	312	Right-handed alpha
Helix 26	AC8	B	318	325	Right-handed alpha
Helix 27	AC9	B	359	368	Right-handed alpha
Helix 28	AD1	B	374	378	Right-handed 310
Helix 29	AD2	B	382	384	Right-handed 310
Helix 30	AD3	B	434	437	Right-handed 310
Helix 31	AD4	B	489	494	Right-handed alpha
Helix 32	AD5	B	495	498	Right-handed 310
Helix 33	AD6	B	523	528	Right-handed alpha
Helix 34	AD7	B	532	536	Right-handed 310
Helix 35	AD8	B	537	547	Right-handed alpha
Helix 36	AD9	C	22	35	Right-handed alpha
Helix 37	AE1	C	37	41	Right-handed 310
Helix 38	AE2	C	55	60	Right-handed 310

There are 12 sheets in PDB entry 5KYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	347	first strand
Strand 2	A	326	334	anti-parallel
Strand 3	A	389	397	anti-parallel
Strand 4	A	371	373	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	A	401	406	parallel
Strand 3	A	511	520	anti-parallel
Strand 4	A	447	458	anti-parallel
Strand 5	A	430	432	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	A	401	406	parallel
Strand 3	A	511	520	anti-parallel
Strand 4	A	447	458	anti-parallel
Strand 5	A	463	469	anti-parallel
Strand 6	A	477	481	anti-parallel
Strand 7	A	484	488	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	386	387	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	417	420	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	66	70	parallel
Strand 4	D	42	45	anti-parallel
Strand 5	D	48	49	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	347	first strand
Strand 2	B	326	334	anti-parallel
Strand 3	B	389	397	anti-parallel
Strand 4	B	371	373	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	353	first strand
Strand 2	B	401	407	parallel
Strand 3	B	511	520	anti-parallel
Strand 4	B	447	459	anti-parallel
Strand 5	B	430	432	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	353	first strand
Strand 2	B	401	407	parallel
Strand 3	B	511	520	anti-parallel
Strand 4	B	447	459	anti-parallel
Strand 5	B	462	469	anti-parallel
Strand 6	B	478	481	anti-parallel
Strand 7	B	484	487	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	380	first strand
Strand 2	B	386	387	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	412	first strand
Strand 2	B	417	420	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	66	70	parallel
Strand 4	C	42	45	anti-parallel
Strand 5	C	48	49	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KYE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KYE