Analysis of interatomic Contacts of Structural Units in PDB entry:
5KYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KYM entry

There are 2 chains in PDB entry 5KYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 247
B
 MET 1ARG 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5KYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 35Right-handed alpha
Helix 2
AA2
A
37 60Right-handed alpha
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
88 97Right-handed alpha
Helix 5
AA5
A
105 111Right-handed 310
Helix 6
AA6
A
113 121Right-handed alpha
Helix 7
AA7
A
136 148Right-handed alpha
Helix 8
AA8
A
173 178Right-handed alpha
Helix 9
AA9
A
190 195Right-handed alpha
Helix 10
AB1
A
216 220Right-handed 310
Helix 11
AB2
A
222 244Right-handed alpha
Helix 12
AB3
B
1 3Right-handed 310
Helix 13
AB4
B
4 35Right-handed alpha
Helix 14
AB5
B
37 60Right-handed alpha
Helix 15
AB6
B
68 72Right-handed 310
Helix 16
AB7
B
88 97Right-handed alpha
Helix 17
AB8
B
113 121Right-handed alpha
Helix 18
AB9
B
136 148Right-handed alpha
Helix 19
AC1
B
173 178Right-handed alpha
Helix 20
AC2
B
190 195Right-handed alpha
Helix 21
AC3
B
216 220Right-handed 310
Helix 22
AC4
B
222 242Right-handed alpha
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There are 3 sheets in PDB entry 5KYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
207 211parallel
Strand 3
A
183 189anti-parallel
Strand 4
A
79 82parallel
Strand 5
A
151 153parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
124 125parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 67first strand
Strand 2
B
207 211parallel
Strand 3
B
183 189anti-parallel
Strand 4
B
79 82parallel
Strand 5
B
151 153parallel
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