Analysis of interatomic Contacts of Structural Units in PDB entry:
5KZ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KZ6 entry

There are 2 chains in PDB entry 5KZ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 30ILE 356
B
 ASN 30ILE 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5KZ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 55Right-handed 310
Helix 2
AA2
A
84 98Right-handed alpha
Helix 3
AA3
A
117 136Right-handed alpha
Helix 4
AA4
A
162 180Right-handed alpha
Helix 5
AA5
A
190 199Right-handed 310
Helix 6
AA6
A
208 216Right-handed alpha
Helix 7
AA7
A
244 258Right-handed alpha
Helix 8
AA8
A
273 275Right-handed 310
Helix 9
AA9
A
284 288Right-handed 310
Helix 10
AB1
A
295 309Right-handed alpha
Helix 11
AB2
A
334 341Right-handed alpha
Helix 12
AB3
A
343 356Right-handed alpha
Helix 13
AB4
B
51 55Right-handed 310
Helix 14
AB5
B
84 98Right-handed alpha
Helix 15
AB6
B
117 136Right-handed alpha
Helix 16
AB7
B
162 180Right-handed alpha
Helix 17
AB8
B
190 199Right-handed 310
Helix 18
AB9
B
208 216Right-handed alpha
Helix 19
AC1
B
244 258Right-handed alpha
Helix 20
AC2
B
273 275Right-handed 310
Helix 21
AC3
B
284 288Right-handed 310
Helix 22
AC4
B
295 309Right-handed alpha
Helix 23
AC5
B
334 341Right-handed alpha
Helix 24
AC6
B
343 355Right-handed alpha
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There are 6 sheets in PDB entry 5KZ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
61 69anti-parallel
Strand 3
A
101 107parallel
Strand 4
A
139 143parallel
Strand 5
A
184 187parallel
Strand 6
A
221 225parallel
Strand 7
A
277 282parallel
Strand 8
A
329 333parallel
Strand 9
A
35 41parallel
Strand 10
A
61 69parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 233first strand
Strand 2
A
239 241anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
264 269anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 77first strand
Strand 2
B
61 69anti-parallel
Strand 3
B
101 107parallel
Strand 4
B
139 143parallel
Strand 5
B
184 187parallel
Strand 6
B
221 225parallel
Strand 7
B
277 282parallel
Strand 8
B
329 333parallel
Strand 9
B
35 41parallel
Strand 10
B
61 69parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 233first strand
Strand 2
B
239 241anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 261first strand
Strand 2
B
264 269anti-parallel
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