Analysis of interatomic Contacts of Structural Units in PDB entry:
5KZM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KZM entry

There are 3 chains in PDB entry 5KZM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ASN 269
B
 MSE 1HIS 85
B
 THR 87GLU 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5KZM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
30 44Right-handed alpha
Helix 3
AA3
A
62 75Right-handed alpha
Helix 4
AA4
A
78 93Right-handed alpha
Helix 5
AA5
A
103 109Right-handed alpha
Helix 6
AA6
A
111 122Right-handed alpha
Helix 7
AA7
A
133 136Right-handed 310
Helix 8
AA8
A
137 148Right-handed alpha
Helix 9
AA9
A
160 171Right-handed alpha
Helix 10
AB1
A
193 204Right-handed alpha
Helix 11
AB2
A
217 226Right-handed alpha
Helix 12
AB3
A
235 244Right-handed alpha
Helix 13
AB4
A
248 266Right-handed alpha
Helix 14
AB5
B
17 19Right-handed 310
Helix 15
AB6
B
20 37Right-handed alpha
Helix 16
AB7
B
37 51Right-handed alpha
Helix 17
AB8
B
78 80Right-handed 310
Helix 18
AB9
B
85 99Right-handed alpha
Helix 19
AC1
B
112 125Right-handed alpha
Helix 20
AC2
B
135 141Right-handed alpha
Helix 21
AC3
B
141 151Right-handed alpha
Helix 22
AC4
B
164 180Right-handed alpha
Helix 23
AC5
B
195 205Right-handed alpha
Helix 24
AC6
B
205 219Right-handed alpha
Helix 25
AC7
B
233 241Right-handed alpha
Helix 26
AC8
B
242 244Right-handed 310
Helix 27
AC9
B
260 264Right-handed 310
Helix 28
AD1
B
300 304Right-handed 310
Helix 29
AD2
B
309 318Right-handed alpha
Helix 30
AD3
B
328 341Right-handed alpha
Helix 31
AD4
B
347 364Right-handed alpha
Helix 32
AD5
B
379 381Right-handed 310
Helix 33
AD6
B
382 394Right-handed alpha
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There are 4 sheets in PDB entry 5KZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
126 129parallel
Strand 3
A
98 102parallel
Strand 4
A
49 52parallel
Strand 5
A
19 25parallel
Strand 6
A
231 234parallel
Strand 7
A
209 211parallel
Strand 8
A
175 177parallel
Strand 9
A
154 155parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
70 76anti-parallel
Strand 3
B
369 375parallel
Strand 4
B
225 229parallel
Strand 5
B
250 258parallel
Strand 6
B
321 327parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 158first strand
Strand 2
B
128 134parallel
Strand 3
B
104 108parallel
Strand 4
B
183 185parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 278first strand
Strand 2
B
281 285anti-parallel
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