Analysis of interatomic Contacts of Structural Units in PDB entry:
5KZN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KZN entry

There is 1 chain in PDB entry 5KZN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 23ALA 548
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5KZN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 75Right-handed alpha
Helix 2
AA2
A
94 109Right-handed alpha
Helix 3
AA3
A
144 156Right-handed alpha
Helix 4
AA4
A
157 159Right-handed 310
Helix 5
AA5
A
169 174Right-handed 310
Helix 6
AA6
A
187 190Right-handed 310
Helix 7
AA7
A
191 202Right-handed alpha
Helix 8
AA8
A
214 231Right-handed alpha
Helix 9
AA9
A
246 258Right-handed alpha
Helix 10
AB1
A
271 285Right-handed alpha
Helix 11
AB2
A
301 305Right-handed 310
Helix 12
AB3
A
307 312Right-handed alpha
Helix 13
AB4
A
324 333Right-handed alpha
Helix 14
AB5
A
344 353Right-handed alpha
Helix 15
AB6
A
377 400Right-handed alpha
Helix 16
AB7
A
407 411Right-handed 310
Helix 17
AB8
A
414 422Right-handed alpha
Helix 18
AB9
A
482 485Right-handed 310
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There are 6 sheets in PDB entry 5KZN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
84 90anti-parallel
Strand 3
A
32 38parallel
Strand 4
A
138 141parallel
Strand 5
A
162 164parallel
Strand 6
A
181 183parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
50 53anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 241first strand
Strand 2
A
206 212parallel
Strand 3
A
265 269parallel
Strand 4
A
290 293parallel
Strand 5
A
315 319parallel
Strand 6
A
453 460anti-parallel
Strand 7
A
466 474anti-parallel
Strand 8
A
478 480anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
440 441anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 511first strand
Strand 2
A
521 524anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 533first strand
Strand 2
A
536 539anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il