Analysis of interatomic Contacts of Structural Units in PDB entry:
5KZS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KZS entry

There is 1 chain in PDB entry 5KZS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 32ASN 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5KZS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 45Right-handed alpha
Helix 2
AA2
A
47 59Right-handed alpha
Helix 3
AA3
A
68 74Right-handed alpha
Helix 4
AA4
A
86 92Right-handed alpha
Helix 5
AA5
A
93 96Right-handed 310
Helix 6
AA6
A
186 190Right-handed 310
Helix 7
AA7
A
258 262Right-handed 310
Helix 8
AA8
A
289 298Right-handed alpha
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There are 7 sheets in PDB entry 5KZS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
66 67anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
103 106parallel
Strand 3
A
127 130parallel
Strand 4
A
154 156parallel
Strand 5
A
177 179parallel
Strand 6
A
201 203parallel
Strand 7
A
223 225parallel
Strand 8
A
246 248parallel
Strand 9
A
265 266parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
161 162parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
253 254parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 273first strand
Strand 2
A
358 367parallel
Strand 3
A
277 280parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 273first strand
Strand 2
A
358 367parallel
Strand 3
A
339 347anti-parallel
Strand 4
A
306 310anti-parallel
Strand 5
A
316 318anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
328 331anti-parallel
Strand 3
A
320 323anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il