Analysis of interatomic Contacts of Structural Units in PDB entry:
5KZT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KZT entry

There are 4 chains in PDB entry 5KZT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 42	LEU 559
B	ALA 41	LEU 559
C	SER 1	GLY 6
D	SER 1	GLY 6

There are 50 helices in PDB entry 5KZT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	76	Right-handed alpha
Helix 2	AA2	A	123	136	Right-handed alpha
Helix 3	AA3	A	137	140	Right-handed 310
Helix 4	AA4	A	141	150	Right-handed 310
Helix 5	AA5	A	152	158	Right-handed alpha
Helix 6	AA6	A	162	166	Right-handed 310
Helix 7	AA7	A	186	192	Right-handed alpha
Helix 8	AA8	A	193	197	Right-handed 310
Helix 9	AA9	A	200	208	Right-handed alpha
Helix 10	AB1	A	209	211	Right-handed 310
Helix 11	AB2	A	214	218	Right-handed 310
Helix 12	AB3	A	246	250	Right-handed 310
Helix 13	AB4	A	262	272	Right-handed alpha
Helix 14	AB5	A	281	287	Right-handed alpha
Helix 15	AB6	A	317	319	Right-handed 310
Helix 16	AB7	A	320	330	Right-handed alpha
Helix 17	AB8	A	332	340	Right-handed alpha
Helix 18	AB9	A	365	371	Right-handed alpha
Helix 19	AC1	A	377	393	Right-handed alpha
Helix 20	AC2	A	406	424	Right-handed alpha
Helix 21	AC3	A	435	445	Right-handed alpha
Helix 22	AC4	A	462	467	Right-handed alpha
Helix 23	AC5	A	468	470	Right-handed 310
Helix 24	AC6	A	482	490	Right-handed alpha
Helix 25	AC7	A	501	515	Right-handed alpha
Helix 26	AC8	B	65	76	Right-handed alpha
Helix 27	AC9	B	123	136	Right-handed alpha
Helix 28	AD1	B	137	140	Right-handed 310
Helix 29	AD2	B	141	150	Right-handed 310
Helix 30	AD3	B	152	158	Right-handed alpha
Helix 31	AD4	B	162	166	Right-handed 310
Helix 32	AD5	B	186	192	Right-handed alpha
Helix 33	AD6	B	193	197	Right-handed 310
Helix 34	AD7	B	200	208	Right-handed alpha
Helix 35	AD8	B	209	211	Right-handed 310
Helix 36	AD9	B	214	218	Right-handed 310
Helix 37	AE1	B	246	250	Right-handed 310
Helix 38	AE2	B	262	272	Right-handed alpha
Helix 39	AE3	B	281	287	Right-handed alpha
Helix 40	AE4	B	317	319	Right-handed 310
Helix 41	AE5	B	320	330	Right-handed alpha
Helix 42	AE6	B	332	340	Right-handed alpha
Helix 43	AE7	B	365	371	Right-handed alpha
Helix 44	AE8	B	377	393	Right-handed alpha
Helix 45	AE9	B	406	424	Right-handed alpha
Helix 46	AF1	B	435	445	Right-handed alpha
Helix 47	AF2	B	462	467	Right-handed alpha
Helix 48	AF3	B	468	470	Right-handed 310
Helix 49	AF4	B	482	490	Right-handed alpha
Helix 50	AF5	B	501	515	Right-handed alpha

There are 16 sheets in PDB entry 5KZT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	51	first strand
Strand 2	A	254	259	parallel
Strand 3	A	235	240	anti-parallel
Strand 4	A	224	227	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	88	90	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	105	109	anti-parallel
Strand 3	A	175	179	anti-parallel
Strand 4	A	168	172	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	280	first strand
Strand 2	A	521	533	anti-parallel
Strand 3	A	346	347	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	280	first strand
Strand 2	A	521	533	anti-parallel
Strand 3	A	294	307	anti-parallel
Strand 4	A	450	455	anti-parallel
Strand 5	A	397	404	parallel
Strand 6	A	427	434	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	311	first strand
Strand 2	A	314	315	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	538	first strand
Strand 2	A	555	556	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	542	first strand
Strand 2	A	549	550	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	254	259	parallel
Strand 3	B	235	240	anti-parallel
Strand 4	B	224	227	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	88	90	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	105	109	anti-parallel
Strand 3	B	175	179	anti-parallel
Strand 4	B	168	172	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	280	first strand
Strand 2	B	521	533	anti-parallel
Strand 3	B	346	347	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	280	first strand
Strand 2	B	521	533	anti-parallel
Strand 3	B	294	307	anti-parallel
Strand 4	B	450	455	anti-parallel
Strand 5	B	397	404	parallel
Strand 6	B	427	434	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	311	first strand
Strand 2	B	314	315	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	537	538	first strand
Strand 2	B	555	556	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	542	first strand
Strand 2	B	549	550	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KZT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KZT