Analysis of interatomic Contacts of Structural Units in PDB entry:
5L04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L04 entry

There are 2 chains in PDB entry 5L04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 35GLU 563
B
 ALA 261GLU 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5L04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 68Right-handed alpha
Helix 2
AA2
A
74 76Right-handed 310
Helix 3
AA3
A
152 168Right-handed alpha
Helix 4
AA4
A
178 205Right-handed alpha
Helix 5
AA5
A
216 221Right-handed 310
Helix 6
AA6
A
222 231Right-handed alpha
Helix 7
AA7
A
233 253Right-handed alpha
Helix 8
AA8
A
253 260Right-handed alpha
Helix 9
AA9
A
262 278Right-handed alpha
Helix 10
AB1
A
368 370Right-handed 310
Helix 11
AB2
A
398 417Right-handed alpha
Helix 12
AB3
A
424 428Right-handed 310
Helix 13
AB4
A
429 438Right-handed alpha
Helix 14
AB5
A
445 457Right-handed alpha
Helix 15
AB6
A
518 528Right-handed alpha
Helix 16
AB7
A
558 563Right-handed 310
Helix 17
AB8
B
264 268Right-handed 310
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There are 8 sheets in PDB entry 5L04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
103 109parallel
Strand 4
A
78 82anti-parallel
Strand 5
A
87 88anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
94 97anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
556 557anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
B
278 279parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 288first strand
Strand 2
A
313 318anti-parallel
Strand 3
A
322 327anti-parallel
Strand 4
A
364 367anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
391 395anti-parallel
Strand 3
A
381 386anti-parallel
Strand 4
A
372 378anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 441first strand
Strand 2
A
463 467parallel
Strand 3
A
474 482anti-parallel
Strand 4
A
493 503anti-parallel
Strand 5
A
506 509anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 538first strand
Strand 2
A
529 533anti-parallel
Strand 3
B
291 294anti-parallel
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