Analysis of interatomic Contacts of Structural Units in PDB entry:
5L0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L0C entry

There are 4 chains in PDB entry 5L0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 959GLN 1134
B
 ASN 959TYR 1133
C
 ASN 959TYR 1133
D
 ASN 959GLN 1134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5L0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
963 978Right-handed alpha
Helix 2
AA2
A
985 1007Right-handed alpha
Helix 3
AA3
A
1008 1010Right-handed 310
Helix 4
AA4
A
1011 1040Right-handed alpha
Helix 5
AA5
A
1045 1055Right-handed alpha
Helix 6
AA6
A
1055 1074Right-handed alpha
Helix 7
AA7
A
1080 1114Right-handed alpha
Helix 8
AA8
B
963 978Right-handed alpha
Helix 9
AA9
B
985 1005Right-handed alpha
Helix 10
AB1
B
1008 1010Right-handed 310
Helix 11
AB2
B
1011 1038Right-handed alpha
Helix 12
AB3
B
1044 1073Right-handed alpha
Helix 13
AB4
B
1080 1112Right-handed alpha
Helix 14
AB5
C
963 978Right-handed alpha
Helix 15
AB6
C
985 1005Right-handed alpha
Helix 16
AB7
C
1011 1038Right-handed alpha
Helix 17
AB8
C
1043 1055Right-handed alpha
Helix 18
AB9
C
1055 1076Right-handed alpha
Helix 19
AC1
C
1080 1115Right-handed alpha
Helix 20
AC2
D
963 978Right-handed alpha
Helix 21
AC3
D
985 1005Right-handed alpha
Helix 22
AC4
D
1011 1040Right-handed alpha
Helix 23
AC5
D
1043 1073Right-handed alpha
Helix 24
AC6
D
1080 1109Right-handed alpha
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There are no sheets in PDB entry 5L0C
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il