Analysis of interatomic Contacts of Structural Units in PDB entry:
5L0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L0D entry

There are 4 chains in PDB entry 5L0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 960THR 1130
B
 GLN 960THR 1130
C
 ASN 959THR 1130
D
 VAL 962THR 1130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5L0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
963 980Right-handed alpha
Helix 2
AA2
A
985 1007Right-handed alpha
Helix 3
AA3
A
1011 1038Right-handed alpha
Helix 4
AA4
A
1042 1054Right-handed alpha
Helix 5
AA5
A
1055 1074Right-handed alpha
Helix 6
AA6
A
1080 1119Right-handed alpha
Helix 7
AA7
B
963 978Right-handed alpha
Helix 8
AA8
B
985 1007Right-handed alpha
Helix 9
AA9
B
1011 1039Right-handed alpha
Helix 10
AB1
B
1042 1054Right-handed alpha
Helix 11
AB2
B
1055 1074Right-handed alpha
Helix 12
AB3
B
1080 1116Right-handed alpha
Helix 13
AB4
C
963 978Right-handed alpha
Helix 14
AB5
C
985 1007Right-handed alpha
Helix 15
AB6
C
1010 1039Right-handed alpha
Helix 16
AB7
C
1042 1054Right-handed alpha
Helix 17
AB8
C
1055 1076Right-handed alpha
Helix 18
AB9
C
1080 1115Right-handed alpha
Helix 19
AC1
D
963 978Right-handed alpha
Helix 20
AC2
D
985 1007Right-handed alpha
Helix 21
AC3
D
1010 1039Right-handed alpha
Helix 22
AC4
D
1042 1074Right-handed alpha
Helix 23
AC5
D
1080 1114Right-handed alpha
Helix 24
AC6
D
1118 1122Right-handed 310
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There are no sheets in PDB entry 5L0D
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il