Analysis of interatomic Contacts of Structural Units in PDB entry:
5L0E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L0E entry

There are 2 chains in PDB entry 5L0E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 52	GLU 859
B	THR 52	GLU 859

There are 78 helices in PDB entry 5L0E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	76	80	Right-handed 310
Helix 2	AA2	A	88	94	Right-handed alpha
Helix 3	AA3	A	103	107	Right-handed 310
Helix 4	AA4	A	122	127	Right-handed alpha
Helix 5	AA5	A	132	137	Right-handed alpha
Helix 6	AA6	A	142	146	Right-handed 310
Helix 7	AA7	A	176	181	Right-handed alpha
Helix 8	AA8	A	182	184	Right-handed 310
Helix 9	AA9	A	185	195	Right-handed alpha
Helix 10	AB1	A	208	219	Right-handed alpha
Helix 11	AB2	A	221	226	Right-handed alpha
Helix 12	AB3	A	246	250	Right-handed 310
Helix 13	AB4	A	258	265	Right-handed alpha
Helix 14	AB5	A	280	292	Right-handed alpha
Helix 15	AB6	A	311	318	Right-handed alpha
Helix 16	AB7	A	321	323	Right-handed 310
Helix 17	AB8	A	324	345	Right-handed alpha
Helix 18	AB9	A	373	375	Right-handed 310
Helix 19	AC1	A	378	380	Right-handed 310
Helix 20	AC2	A	403	412	Right-handed alpha
Helix 21	AC3	A	426	428	Right-handed 310
Helix 22	AC4	A	429	433	Right-handed 310
Helix 23	AC5	A	480	484	Right-handed 310
Helix 24	AC6	A	507	516	Right-handed alpha
Helix 25	AC7	A	530	534	Right-handed 310
Helix 26	AC8	A	558	562	Right-handed 310
Helix 27	AC9	A	590	596	Right-handed alpha
Helix 28	AD1	A	645	649	Right-handed 310
Helix 29	AD2	A	659	663	Right-handed 310
Helix 30	AD3	A	665	672	Right-handed alpha
Helix 31	AD4	A	682	686	Right-handed 310
Helix 32	AD5	A	690	699	Right-handed 310
Helix 33	AD6	A	705	718	Right-handed alpha
Helix 34	AD7	A	718	728	Right-handed alpha
Helix 35	AD8	A	748	752	Right-handed 310
Helix 36	AD9	A	780	784	Right-handed 310
Helix 37	AE1	A	810	813	Right-handed 310
Helix 38	AE2	A	814	822	Right-handed alpha
Helix 39	AE3	A	825	834	Right-handed alpha
Helix 40	AE4	A	844	854	Right-handed alpha
Helix 41	AE5	B	76	80	Right-handed 310
Helix 42	AE6	B	88	94	Right-handed alpha
Helix 43	AE7	B	103	107	Right-handed 310
Helix 44	AE8	B	122	127	Right-handed alpha
Helix 45	AE9	B	132	137	Right-handed alpha
Helix 46	AF1	B	142	146	Right-handed 310
Helix 47	AF2	B	174	184	Right-handed 310
Helix 48	AF3	B	185	195	Right-handed alpha
Helix 49	AF4	B	208	219	Right-handed alpha
Helix 50	AF5	B	221	226	Right-handed alpha
Helix 51	AF6	B	258	265	Right-handed alpha
Helix 52	AF7	B	280	292	Right-handed alpha
Helix 53	AF8	B	311	318	Right-handed alpha
Helix 54	AF9	B	321	323	Right-handed 310
Helix 55	AG1	B	324	345	Right-handed alpha
Helix 56	AG2	B	373	375	Right-handed 310
Helix 57	AG3	B	378	380	Right-handed 310
Helix 58	AG4	B	403	412	Right-handed alpha
Helix 59	AG5	B	426	428	Right-handed 310
Helix 60	AG6	B	429	433	Right-handed 310
Helix 61	AG7	B	480	484	Right-handed 310
Helix 62	AG8	B	507	516	Right-handed alpha
Helix 63	AG9	B	530	534	Right-handed 310
Helix 64	AH1	B	558	562	Right-handed 310
Helix 65	AH2	B	590	596	Right-handed alpha
Helix 66	AH3	B	645	649	Right-handed 310
Helix 67	AH4	B	659	663	Right-handed 310
Helix 68	AH5	B	665	672	Right-handed alpha
Helix 69	AH6	B	682	686	Right-handed 310
Helix 70	AH7	B	690	699	Right-handed 310
Helix 71	AH8	B	705	718	Right-handed alpha
Helix 72	AH9	B	718	728	Right-handed alpha
Helix 73	AI1	B	748	752	Right-handed 310
Helix 74	AI2	B	780	784	Right-handed 310
Helix 75	AI3	B	810	813	Right-handed 310
Helix 76	AI4	B	814	822	Right-handed alpha
Helix 77	AI5	B	825	834	Right-handed alpha
Helix 78	AI6	B	844	854	Right-handed alpha

There are 17 sheets in PDB entry 5L0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	310	first strand
Strand 2	A	165	171	parallel
Strand 3	A	352	357	parallel
Strand 4	A	485	490	anti-parallel
Strand 5	A	196	202	anti-parallel
Strand 6	A	498	499	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	310	first strand
Strand 2	A	165	171	parallel
Strand 3	A	352	357	parallel
Strand 4	A	485	490	anti-parallel
Strand 5	A	196	202	anti-parallel
Strand 6	A	503	504	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	239	241	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	472	473	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	371	first strand
Strand 2	A	452	454	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	385	first strand
Strand 2	A	389	394	anti-parallel
Strand 3	A	443	447	anti-parallel
Strand 4	A	420	424	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	603	first strand
Strand 2	A	835	836	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	613	first strand
Strand 2	A	618	622	anti-parallel
Strand 3	A	628	635	anti-parallel
Strand 4	A	730	737	anti-parallel
Strand 5	A	766	774	anti-parallel
Strand 6	A	788	796	anti-parallel
Strand 7	A	823	824	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	676	679	first strand
Strand 2	A	701	704	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	310	first strand
Strand 2	B	165	171	parallel
Strand 3	B	352	357	parallel
Strand 4	B	485	490	anti-parallel
Strand 5	B	196	202	anti-parallel
Strand 6	B	498	499	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	310	first strand
Strand 2	B	165	171	parallel
Strand 3	B	352	357	parallel
Strand 4	B	485	490	anti-parallel
Strand 5	B	196	202	anti-parallel
Strand 6	B	503	504	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	239	241	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	371	first strand
Strand 2	B	452	454	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	385	first strand
Strand 2	B	389	394	anti-parallel
Strand 3	B	443	447	anti-parallel
Strand 4	B	420	424	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	603	first strand
Strand 2	B	835	836	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	609	613	first strand
Strand 2	B	618	622	anti-parallel
Strand 3	B	627	635	anti-parallel
Strand 4	B	730	737	anti-parallel
Strand 5	B	766	774	anti-parallel
Strand 6	B	788	796	anti-parallel
Strand 7	B	823	824	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	676	679	first strand
Strand 2	B	701	704	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L0E

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L0E