Analysis of interatomic Contacts of Structural Units in PDB entry:
5L0L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L0L entry

There are 2 chains in PDB entry 5L0L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 94LYS 308
B
 GLY 94LYS 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5L0L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
139 142Right-handed 310
Helix 2
AA2
A
156 160Right-handed 310
Helix 3
AA3
A
165 186Right-handed alpha
Helix 4
AA4
A
196 198Right-handed 310
Helix 5
AA5
A
268 288Right-handed alpha
Helix 6
AA6
A
289 297Right-handed alpha
Helix 7
AA7
B
139 142Right-handed 310
Helix 8
AA8
B
156 160Right-handed 310
Helix 9
AA9
B
165 186Right-handed alpha
Helix 10
AB1
B
196 198Right-handed 310
Helix 11
AB2
B
268 287Right-handed alpha
Helix 12
AB3
B
289 297Right-handed alpha
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There are 3 sheets in PDB entry 5L0L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
208 211parallel
Strand 3
A
200 203anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 304first strand
Strand 2
A
118 124anti-parallel
Strand 3
A
128 134anti-parallel
Strand 4
A
144 151anti-parallel
Strand 5
A
221 227anti-parallel
Strand 6
A
189 194anti-parallel
Strand 7
B
189 194anti-parallel
Strand 8
B
221 227anti-parallel
Strand 9
B
144 151anti-parallel
Strand 10
B
128 134anti-parallel
Strand 11
B
118 124anti-parallel
Strand 12
B
300 304anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
208 211parallel
Strand 3
B
200 203anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il