Analysis of interatomic Contacts of Structural Units in PDB entry:
5L1N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L1N entry

There are 2 chains in PDB entry 5L1N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 5	HIS 448
B	MET 5	GLU 447

There are 28 helices in PDB entry 5L1N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	29	Right-handed alpha
Helix 2	AA2	A	46	48	Right-handed 310
Helix 3	AA3	A	49	55	Right-handed alpha
Helix 4	AA4	A	59	64	Right-handed 310
Helix 5	AA5	A	67	73	Right-handed alpha
Helix 6	AA6	A	135	149	Right-handed alpha
Helix 7	AA7	A	160	172	Right-handed alpha
Helix 8	AA8	A	192	207	Right-handed alpha
Helix 9	AA9	A	249	255	Right-handed alpha
Helix 10	AB1	A	300	316	Right-handed alpha
Helix 11	AB2	A	344	351	Right-handed alpha
Helix 12	AB3	A	398	412	Right-handed alpha
Helix 13	AB4	A	414	420	Right-handed alpha
Helix 14	AB5	A	434	444	Right-handed alpha
Helix 15	AB6	B	15	29	Right-handed alpha
Helix 16	AB7	B	46	48	Right-handed 310
Helix 17	AB8	B	49	55	Right-handed alpha
Helix 18	AB9	B	59	64	Right-handed 310
Helix 19	AC1	B	67	73	Right-handed alpha
Helix 20	AC2	B	135	149	Right-handed alpha
Helix 21	AC3	B	160	172	Right-handed alpha
Helix 22	AC4	B	192	207	Right-handed alpha
Helix 23	AC5	B	249	255	Right-handed alpha
Helix 24	AC6	B	300	316	Right-handed alpha
Helix 25	AC7	B	344	351	Right-handed alpha
Helix 26	AC8	B	398	412	Right-handed alpha
Helix 27	AC9	B	414	420	Right-handed alpha
Helix 28	AD1	B	434	444	Right-handed alpha

There are 14 sheets in PDB entry 5L1N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	33	37	parallel
Strand 3	A	8	12	parallel
Strand 4	A	108	111	parallel
Strand 5	A	278	280	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	89	first strand
Strand 2	A	92	96	anti-parallel
Strand 3	A	102	105	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	245	247	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	238	241	parallel
Strand 3	A	153	157	parallel
Strand 4	A	176	181	parallel
Strand 5	A	208	211	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	220	first strand
Strand 2	A	224	229	anti-parallel
Strand 3	A	233	235	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	A	295	296	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	333	first strand
Strand 2	A	336	342	anti-parallel
Strand 3	A	388	395	anti-parallel
Strand 4	A	374	382	anti-parallel
Strand 5	A	355	363	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	80	first strand
Strand 2	B	33	37	parallel
Strand 3	B	8	12	parallel
Strand 4	B	108	111	parallel
Strand 5	B	278	280	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	89	first strand
Strand 2	B	92	96	anti-parallel
Strand 3	B	101	105	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	B	245	247	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	132	first strand
Strand 2	B	238	241	parallel
Strand 3	B	153	157	parallel
Strand 4	B	176	181	parallel
Strand 5	B	208	211	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	220	first strand
Strand 2	B	224	229	anti-parallel
Strand 3	B	233	235	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	288	first strand
Strand 2	B	295	296	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	333	first strand
Strand 2	B	336	342	anti-parallel
Strand 3	B	388	395	anti-parallel
Strand 4	B	374	382	anti-parallel
Strand 5	B	355	363	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L1N

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L1N