Analysis of interatomic Contacts of Structural Units in PDB entry:
5L1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L1T entry

There is 1 chain in PDB entry 5L1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2PHE 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5L1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 28Right-handed alpha
Helix 2
AA2
A
45 54Right-handed alpha
Helix 3
AA3
A
71 81Right-handed alpha
Helix 4
AA4
A
88 101Right-handed alpha
Helix 5
AA5
A
102 104Right-handed 310
Helix 6
AA6
A
105 129Right-handed alpha
Helix 7
AA7
A
136 140Right-handed alpha
Helix 8
AA8
A
142 154Right-handed alpha
Helix 9
AA9
A
158 164Right-handed alpha
Helix 10
AB1
A
165 171Right-handed alpha
Helix 11
AB2
A
175 200Right-handed alpha
Helix 12
AB3
A
204 212Right-handed alpha
Helix 13
AB4
A
213 216Right-handed 310
Helix 14
AB5
A
218 233Right-handed alpha
Helix 15
AB6
A
234 251Right-handed alpha
Helix 16
AB7
A
251 261Right-handed alpha
Helix 17
AB8
A
264 276Right-handed alpha
Helix 18
AB9
A
281 285Right-handed 310
Helix 19
AC1
A
310 316Right-handed alpha
Helix 20
AC2
A
342 346Right-handed 310
Helix 21
AC3
A
349 368Right-handed alpha
Helix 22
AC4
A
376 380Right-handed 310
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There are 3 sheets in PDB entry 5L1T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
40 43anti-parallel
Strand 3
A
306 309parallel
Strand 4
A
286 290anti-parallel
Strand 5
A
58 59anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
372 373anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
299 301anti-parallel
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