Analysis of interatomic Contacts of Structural Units in PDB entry:
5L1X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L1X entry

There are 6 chains in PDB entry 5L1X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 19	ARG 91
B	THR 114	SER 482
C	LEU 19	ARG 91
D	ALA 115	SER 483
E	LEU 19	ARG 91
F	THR 114	ILE 467

There are 67 helices in PDB entry 5L1X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	82	Right-handed alpha
Helix 2	AA2	A	83	85	Right-handed 310
Helix 3	AA3	A	87	91	Right-handed 310
Helix 4	AA4	B	115	171	Right-handed alpha
Helix 5	AA5	B	171	197	Right-handed alpha
Helix 6	AA6	B	197	210	Right-handed alpha
Helix 7	AA7	B	223	233	Right-handed alpha
Helix 8	AA8	B	237	247	Right-handed alpha
Helix 9	AA9	B	247	255	Right-handed alpha
Helix 10	AB1	B	322	324	Right-handed 310
Helix 11	AB2	B	344	352	Right-handed 310
Helix 12	AB3	B	452	482	Right-handed alpha
Helix 13	AB4	C	65	83	Right-handed alpha
Helix 14	AB5	C	87	91	Right-handed 310
Helix 15	AB6	D	116	171	Right-handed alpha
Helix 16	AB7	D	171	197	Right-handed alpha
Helix 17	AB8	D	197	210	Right-handed alpha
Helix 18	AB9	D	223	233	Right-handed alpha
Helix 19	AC1	D	237	247	Right-handed alpha
Helix 20	AC2	D	247	255	Right-handed alpha
Helix 21	AC3	D	322	324	Right-handed 310
Helix 22	AC4	D	344	352	Right-handed 310
Helix 23	AC5	D	452	482	Right-handed alpha
Helix 24	AC6	E	67	83	Right-handed alpha
Helix 25	AC7	E	87	91	Right-handed 310
Helix 26	AC8	F	115	171	Right-handed alpha
Helix 27	AC9	F	171	197	Right-handed alpha
Helix 28	AD1	F	197	210	Right-handed alpha
Helix 29	AD2	F	223	233	Right-handed alpha
Helix 30	AD3	F	237	247	Right-handed alpha
Helix 31	AD4	F	247	255	Right-handed alpha
Helix 32	AD5	F	322	324	Right-handed 310
Helix 33	AD6	F	344	352	Right-handed 310
Helix 34	AD7	F	452	482	Right-handed alpha
Helix 35	AD8	G	65	83	Right-handed alpha
Helix 36	AD9	G	87	91	Right-handed 310
Helix 37	AE1	H	115	171	Right-handed alpha
Helix 38	AE2	H	171	197	Right-handed alpha
Helix 39	AE3	H	197	210	Right-handed alpha
Helix 40	AE4	H	223	233	Right-handed alpha
Helix 41	AE5	H	237	247	Right-handed alpha
Helix 42	AE6	H	247	255	Right-handed alpha
Helix 43	AE7	H	322	324	Right-handed 310
Helix 44	AE8	H	344	352	Right-handed 310
Helix 45	AE9	H	452	482	Right-handed alpha
Helix 46	AF1	I	65	83	Right-handed alpha
Helix 47	AF2	I	87	91	Right-handed 310
Helix 48	AF3	J	116	171	Right-handed alpha
Helix 49	AF4	J	171	197	Right-handed alpha
Helix 50	AF5	J	197	210	Right-handed alpha
Helix 51	AF6	J	223	233	Right-handed alpha
Helix 52	AF7	J	237	247	Right-handed alpha
Helix 53	AF8	J	247	255	Right-handed alpha
Helix 54	AF9	J	322	324	Right-handed 310
Helix 55	AG1	J	344	352	Right-handed 310
Helix 56	AG2	J	452	482	Right-handed alpha
Helix 57	AG3	K	65	83	Right-handed alpha
Helix 58	AG4	K	87	91	Right-handed 310
Helix 59	AG5	L	115	171	Right-handed alpha
Helix 60	AG6	L	171	197	Right-handed alpha
Helix 61	AG7	L	197	210	Right-handed alpha
Helix 62	AG8	L	223	233	Right-handed alpha
Helix 63	AG9	L	237	247	Right-handed alpha
Helix 64	AH1	L	247	255	Right-handed alpha
Helix 65	AH2	L	322	324	Right-handed 310
Helix 66	AH3	L	344	352	Right-handed 310
Helix 67	AH4	L	452	482	Right-handed alpha

There are 36 sheets in PDB entry 5L1X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	29	40	anti-parallel
Strand 3	B	332	335	parallel
Strand 4	B	326	329	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	29	40	anti-parallel
Strand 3	B	276	288	anti-parallel
Strand 4	B	308	313	anti-parallel
Strand 5	B	316	320	anti-parallel
Strand 6	B	341	343	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	256	263	anti-parallel
Strand 3	B	266	273	anti-parallel
Strand 4	A	44	51	anti-parallel
Strand 5	D	430	438	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	294	first strand
Strand 2	B	299	304	anti-parallel
Strand 3	B	363	366	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	375	first strand
Strand 2	B	379	384	anti-parallel
Strand 3	B	406	411	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	402	first strand
Strand 2	B	390	393	anti-parallel
Strand 3	B	417	420	anti-parallel
Strand 4	B	423	426	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	438	first strand
Strand 2	E	44	51	parallel
Strand 3	F	266	273	anti-parallel
Strand 4	F	256	263	anti-parallel
Strand 5	F	213	214	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	24	first strand
Strand 2	C	29	40	anti-parallel
Strand 3	D	332	335	parallel
Strand 4	D	326	329	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	24	first strand
Strand 2	C	29	40	anti-parallel
Strand 3	D	276	288	anti-parallel
Strand 4	D	308	313	anti-parallel
Strand 5	D	316	320	anti-parallel
Strand 6	D	341	343	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	256	263	anti-parallel
Strand 3	D	266	273	anti-parallel
Strand 4	C	44	51	anti-parallel
Strand 5	F	430	438	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	294	first strand
Strand 2	D	299	304	anti-parallel
Strand 3	D	363	366	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	375	first strand
Strand 2	D	379	384	anti-parallel
Strand 3	D	406	411	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	402	first strand
Strand 2	D	390	393	anti-parallel
Strand 3	D	417	420	anti-parallel
Strand 4	D	423	426	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	24	first strand
Strand 2	E	29	40	anti-parallel
Strand 3	F	332	335	parallel
Strand 4	F	326	329	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	24	first strand
Strand 2	E	29	40	anti-parallel
Strand 3	F	276	288	anti-parallel
Strand 4	F	308	313	anti-parallel
Strand 5	F	316	320	anti-parallel
Strand 6	F	341	343	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	291	294	first strand
Strand 2	F	299	304	anti-parallel
Strand 3	F	363	366	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	372	375	first strand
Strand 2	F	379	384	anti-parallel
Strand 3	F	406	411	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	401	402	first strand
Strand 2	F	390	393	anti-parallel
Strand 3	F	417	420	anti-parallel
Strand 4	F	423	426	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	24	first strand
Strand 2	G	29	40	anti-parallel
Strand 3	H	332	335	parallel
Strand 4	H	326	329	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	24	first strand
Strand 2	G	29	40	anti-parallel
Strand 3	H	276	288	anti-parallel
Strand 4	H	308	313	anti-parallel
Strand 5	H	316	320	anti-parallel
Strand 6	H	341	343	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	213	214	first strand
Strand 2	H	256	263	anti-parallel
Strand 3	H	266	273	anti-parallel
Strand 4	G	44	51	anti-parallel
Strand 5	J	430	438	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	291	295	first strand
Strand 2	H	298	304	anti-parallel
Strand 3	H	363	366	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	372	375	first strand
Strand 2	H	379	384	anti-parallel
Strand 3	H	406	411	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	401	402	first strand
Strand 2	H	390	393	anti-parallel
Strand 3	H	417	420	anti-parallel
Strand 4	H	423	426	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	430	438	first strand
Strand 2	K	44	51	parallel
Strand 3	L	266	273	anti-parallel
Strand 4	L	256	263	anti-parallel
Strand 5	L	213	214	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	24	first strand
Strand 2	I	29	40	anti-parallel
Strand 3	J	332	335	parallel
Strand 4	J	326	329	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	24	first strand
Strand 2	I	29	40	anti-parallel
Strand 3	J	276	288	anti-parallel
Strand 4	J	308	313	anti-parallel
Strand 5	J	316	320	anti-parallel
Strand 6	J	341	343	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	213	214	first strand
Strand 2	J	256	263	anti-parallel
Strand 3	J	266	273	anti-parallel
Strand 4	I	44	51	anti-parallel
Strand 5	L	430	438	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	291	294	first strand
Strand 2	J	299	304	anti-parallel
Strand 3	J	363	366	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	372	375	first strand
Strand 2	J	379	384	anti-parallel
Strand 3	J	406	411	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	399	402	first strand
Strand 2	J	390	393	anti-parallel
Strand 3	J	417	420	anti-parallel
Strand 4	J	423	426	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	24	first strand
Strand 2	K	29	40	anti-parallel
Strand 3	L	332	335	parallel
Strand 4	L	326	329	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	24	first strand
Strand 2	K	29	40	anti-parallel
Strand 3	L	276	288	anti-parallel
Strand 4	L	308	313	anti-parallel
Strand 5	L	316	320	anti-parallel
Strand 6	L	341	343	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	291	294	first strand
Strand 2	L	299	304	anti-parallel
Strand 3	L	363	366	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	372	375	first strand
Strand 2	L	379	384	anti-parallel
Strand 3	L	406	411	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	401	402	first strand
Strand 2	L	390	393	anti-parallel
Strand 3	L	417	420	anti-parallel
Strand 4	L	423	426	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L1X

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L1X