Analysis of interatomic Contacts of Structural Units in PDB entry:
5L22


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L22 entry

There are 2 chains in PDB entry 5L22 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 10LEU 559
A
 LEU 11LEU 559
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5L22. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
10 18Right-handed alpha
Helix 2
AA2
B
20 36Right-handed alpha
Helix 3
AA3
B
37 51Right-handed alpha
Helix 4
AA4
B
57 110Right-handed alpha
Helix 5
AA5
B
116 131Right-handed alpha
Helix 6
AA6
B
131 139Right-handed alpha
Helix 7
AA7
B
140 142Right-handed 310
Helix 8
AA8
B
143 154Right-handed alpha
Helix 9
AA9
B
154 178Right-handed alpha
Helix 10
AB1
B
179 203Right-handed alpha
Helix 11
AB2
B
203 210Right-handed alpha
Helix 12
AB3
B
212 263Right-handed alpha
Helix 13
AB4
B
272 285Right-handed alpha
Helix 14
AB5
B
285 294Right-handed alpha
Helix 15
AB6
B
294 312Right-handed alpha
Helix 16
AB7
B
313 315Right-handed 310
Helix 17
AB8
B
371 381Right-handed alpha
Helix 18
AB9
B
404 407Right-handed 310
Helix 19
AC1
B
423 428Right-handed alpha
Helix 20
AC2
B
434 446Right-handed alpha
Helix 21
AC3
B
447 454Right-handed alpha
Helix 22
AC4
B
463 467Right-handed 310
Helix 23
AC5
B
470 483Right-handed alpha
Helix 24
AC6
B
500 517Right-handed alpha
Helix 25
AC7
B
527 534Right-handed 310
Helix 26
AC8
B
551 558Right-handed alpha
Helix 27
AC9
A
12 17Right-handed alpha
Helix 28
AD1
A
21 36Right-handed alpha
Helix 29
AD2
A
37 51Right-handed alpha
Helix 30
AD3
A
55 110Right-handed alpha
Helix 31
AD4
A
116 131Right-handed alpha
Helix 32
AD5
A
131 138Right-handed alpha
Helix 33
AD6
A
139 141Right-handed 310
Helix 34
AD7
A
142 154Right-handed alpha
Helix 35
AD8
A
154 178Right-handed alpha
Helix 36
AD9
A
181 202Right-handed alpha
Helix 37
AE1
A
203 211Right-handed alpha
Helix 38
AE2
A
212 266Right-handed alpha
Helix 39
AE3
A
272 285Right-handed alpha
Helix 40
AE4
A
285 293Right-handed alpha
Helix 41
AE5
A
294 312Right-handed alpha
Helix 42
AE6
A
313 315Right-handed 310
Helix 43
AE7
A
371 380Right-handed alpha
Helix 44
AE8
A
401 406Right-handed alpha
Helix 45
AE9
A
423 428Right-handed alpha
Helix 46
AF1
A
434 446Right-handed alpha
Helix 47
AF2
A
446 454Right-handed alpha
Helix 48
AF3
A
456 459Right-handed 310
Helix 49
AF4
A
470 484Right-handed alpha
Helix 50
AF5
A
500 517Right-handed alpha
Helix 51
AF6
A
529 534Right-handed alpha
Helix 52
AF7
A
551 558Right-handed alpha
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There are 6 sheets in PDB entry 5L22. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 356first strand
Strand 2
B
332 339anti-parallel
Strand 3
B
385 392anti-parallel
Strand 4
B
395 396anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 412first strand
Strand 2
B
489 493parallel
Strand 3
B
520 524parallel
Strand 4
B
361 365parallel
Strand 5
B
536 541parallel
Strand 6
B
544 550anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 422first strand
Strand 2
B
461 462anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 356first strand
Strand 2
A
332 339anti-parallel
Strand 3
A
387 392anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 412first strand
Strand 2
A
489 493parallel
Strand 3
A
520 524parallel
Strand 4
A
362 365parallel
Strand 5
A
536 541parallel
Strand 6
A
544 550anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 422first strand
Strand 2
A
461 462anti-parallel
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