Analysis of interatomic Contacts of Structural Units in PDB entry:
5L25


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L25 entry

There is 1 chain in PDB entry 5L25 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 33PRO 586
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5L25. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 62Right-handed alpha
Helix 2
AA2
A
68 82Right-handed alpha
Helix 3
AA3
A
96 112Right-handed alpha
Helix 4
AA4
A
120 145Right-handed alpha
Helix 5
AA5
A
147 152Right-handed alpha
Helix 6
AA6
A
155 178Right-handed alpha
Helix 7
AA7
A
181 186Right-handed alpha
Helix 8
AA8
A
199 221Right-handed alpha
Helix 9
AA9
A
222 224Right-handed 310
Helix 10
AB1
A
228 238Right-handed alpha
Helix 11
AB2
A
238 252Right-handed alpha
Helix 12
AB3
A
292 296Right-handed alpha
Helix 13
AB4
A
297 320Right-handed alpha
Helix 14
AB5
A
338 350Right-handed alpha
Helix 15
AB6
A
359 366Right-handed alpha
Helix 16
AB7
A
466 485Right-handed alpha
Helix 17
AB8
A
490 502Right-handed alpha
Helix 18
AB9
A
507 518Right-handed alpha
Helix 19
AC1
A
521 526Right-handed 310
Helix 20
AC2
A
540 545Right-handed 310
Helix 21
AC3
A
546 562Right-handed alpha
Helix 22
AC4
A
570 585Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5L25.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
355 356anti-parallel
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