Analysis of interatomic Contacts of Structural Units in PDB entry:
5L2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L2D entry

There are 4 chains in PDB entry 5L2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -1SER 232
B
 PRO -1SER 232
C
 LYS 233VAL 265
D
 LYS 233VAL 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5L2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 47Right-handed 310
Helix 2
AA2
A
48 56Right-handed alpha
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
182 191Right-handed alpha
Helix 5
AA5
A
197 202Right-handed alpha
Helix 6
AA6
A
206 210Right-handed 310
Helix 7
AA7
B
44 47Right-handed 310
Helix 8
AA8
B
48 56Right-handed alpha
Helix 9
AA9
B
60 64Right-handed 310
Helix 10
AB1
B
182 192Right-handed alpha
Helix 11
AB2
B
197 202Right-handed 310
Helix 12
AB3
B
206 210Right-handed 310
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There are 10 sheets in PDB entry 5L2D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
0 1first strand
Strand 2
C
257 263anti-parallel
Strand 3
A
111 112anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
0 1first strand
Strand 2
C
257 263anti-parallel
Strand 3
A
138 143anti-parallel
Strand 4
C
235 241anti-parallel
Strand 5
A
163 168anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
24 30anti-parallel
Strand 3
A
33 41anti-parallel
Strand 4
A
118 130anti-parallel
Strand 5
A
133 134anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
118 130anti-parallel
Strand 3
C
245 252anti-parallel
Strand 4
A
152 157anti-parallel
Strand 5
A
224 225anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
228 230anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
0 1first strand
Strand 2
D
258 263anti-parallel
Strand 3
B
138 143anti-parallel
Strand 4
D
235 240anti-parallel
Strand 5
B
163 168anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
24 30anti-parallel
Strand 3
B
33 41anti-parallel
Strand 4
B
118 130anti-parallel
Strand 5
B
133 135anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
118 130anti-parallel
Strand 3
D
245 252anti-parallel
Strand 4
B
152 157anti-parallel
Strand 5
B
224 225anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 88first strand
Strand 2
B
111 112anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
228 229anti-parallel
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