Analysis of interatomic Contacts of Structural Units in PDB entry:
5L2O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L2O entry

There are 8 chains in PDB entry 5L2O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 8	SER 501
B	ASP 8	SER 501
C	LEU 9	SER 501
D	LEU 9	SER 501
E	LEU 9	SER 501
F	LEU 9	SER 501
G	ASP 8	SER 501
H	LEU 9	SER 501

There are160 helices in PDB entry 5L2O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	71	Right-handed alpha
Helix 2	AA2	A	75	80	Right-handed alpha
Helix 3	AA3	A	81	99	Right-handed alpha
Helix 4	AA4	A	99	112	Right-handed alpha
Helix 5	AA5	A	114	121	Right-handed alpha
Helix 6	AA6	A	121	137	Right-handed alpha
Helix 7	AA7	A	138	140	Right-handed 310
Helix 8	AA8	A	171	186	Right-handed alpha
Helix 9	AA9	A	199	213	Right-handed alpha
Helix 10	AB1	A	228	236	Right-handed alpha
Helix 11	AB2	A	247	261	Right-handed alpha
Helix 12	AB3	A	283	297	Right-handed alpha
Helix 13	AB4	A	298	301	Right-handed 310
Helix 14	AB5	A	313	328	Right-handed alpha
Helix 15	AB6	A	347	364	Right-handed alpha
Helix 16	AB7	A	394	399	Right-handed alpha
Helix 17	AB8	A	413	423	Right-handed alpha
Helix 18	AB9	A	436	447	Right-handed alpha
Helix 19	AC1	A	469	471	Right-handed 310
Helix 20	AC2	A	478	484	Right-handed alpha
Helix 21	AC3	B	56	71	Right-handed alpha
Helix 22	AC4	B	75	80	Right-handed alpha
Helix 23	AC5	B	81	99	Right-handed alpha
Helix 24	AC6	B	99	112	Right-handed alpha
Helix 25	AC7	B	114	121	Right-handed alpha
Helix 26	AC8	B	121	137	Right-handed alpha
Helix 27	AC9	B	138	140	Right-handed 310
Helix 28	AD1	B	171	186	Right-handed alpha
Helix 29	AD2	B	199	213	Right-handed alpha
Helix 30	AD3	B	228	235	Right-handed alpha
Helix 31	AD4	B	247	261	Right-handed alpha
Helix 32	AD5	B	283	297	Right-handed alpha
Helix 33	AD6	B	298	301	Right-handed 310
Helix 34	AD7	B	313	328	Right-handed alpha
Helix 35	AD8	B	347	364	Right-handed alpha
Helix 36	AD9	B	394	399	Right-handed alpha
Helix 37	AE1	B	413	423	Right-handed alpha
Helix 38	AE2	B	436	447	Right-handed alpha
Helix 39	AE3	B	469	471	Right-handed 310
Helix 40	AE4	B	478	484	Right-handed alpha
Helix 41	AE5	C	56	71	Right-handed alpha
Helix 42	AE6	C	75	80	Right-handed alpha
Helix 43	AE7	C	81	99	Right-handed alpha
Helix 44	AE8	C	99	112	Right-handed alpha
Helix 45	AE9	C	114	121	Right-handed alpha
Helix 46	AF1	C	121	137	Right-handed alpha
Helix 47	AF2	C	138	140	Right-handed 310
Helix 48	AF3	C	171	186	Right-handed alpha
Helix 49	AF4	C	199	213	Right-handed alpha
Helix 50	AF5	C	228	236	Right-handed alpha
Helix 51	AF6	C	247	261	Right-handed alpha
Helix 52	AF7	C	283	297	Right-handed alpha
Helix 53	AF8	C	298	301	Right-handed 310
Helix 54	AF9	C	313	328	Right-handed alpha
Helix 55	AG1	C	347	364	Right-handed alpha
Helix 56	AG2	C	394	399	Right-handed alpha
Helix 57	AG3	C	413	423	Right-handed alpha
Helix 58	AG4	C	436	447	Right-handed alpha
Helix 59	AG5	C	469	471	Right-handed 310
Helix 60	AG6	C	478	484	Right-handed alpha
Helix 61	AG7	D	56	71	Right-handed alpha
Helix 62	AG8	D	75	80	Right-handed alpha
Helix 63	AG9	D	81	99	Right-handed alpha
Helix 64	AH1	D	99	112	Right-handed alpha
Helix 65	AH2	D	114	121	Right-handed alpha
Helix 66	AH3	D	121	137	Right-handed alpha
Helix 67	AH4	D	138	140	Right-handed 310
Helix 68	AH5	D	171	186	Right-handed alpha
Helix 69	AH6	D	199	213	Right-handed alpha
Helix 70	AH7	D	228	236	Right-handed alpha
Helix 71	AH8	D	247	261	Right-handed alpha
Helix 72	AH9	D	283	297	Right-handed alpha
Helix 73	AI1	D	298	301	Right-handed 310
Helix 74	AI2	D	313	328	Right-handed alpha
Helix 75	AI3	D	347	365	Right-handed alpha
Helix 76	AI4	D	394	399	Right-handed alpha
Helix 77	AI5	D	413	423	Right-handed alpha
Helix 78	AI6	D	436	447	Right-handed alpha
Helix 79	AI7	D	469	471	Right-handed 310
Helix 80	AI8	D	478	484	Right-handed alpha
Helix 81	AI9	E	56	71	Right-handed alpha
Helix 82	AJ1	E	75	80	Right-handed alpha
Helix 83	AJ2	E	81	99	Right-handed alpha
Helix 84	AJ3	E	99	112	Right-handed alpha
Helix 85	AJ4	E	114	121	Right-handed alpha
Helix 86	AJ5	E	121	137	Right-handed alpha
Helix 87	AJ6	E	138	140	Right-handed 310
Helix 88	AJ7	E	171	186	Right-handed alpha
Helix 89	AJ8	E	199	213	Right-handed alpha
Helix 90	AJ9	E	228	236	Right-handed alpha
Helix 91	AK1	E	247	261	Right-handed alpha
Helix 92	AK2	E	283	297	Right-handed alpha
Helix 93	AK3	E	298	301	Right-handed 310
Helix 94	AK4	E	313	328	Right-handed alpha
Helix 95	AK5	E	347	364	Right-handed alpha
Helix 96	AK6	E	394	399	Right-handed alpha
Helix 97	AK7	E	413	423	Right-handed alpha
Helix 98	AK8	E	436	447	Right-handed alpha
Helix 99	AK9	E	469	471	Right-handed 310
Helix 100	AL1	E	478	484	Right-handed alpha
Helix 101	AL2	F	56	71	Right-handed alpha
Helix 102	AL3	F	75	80	Right-handed alpha
Helix 103	AL4	F	81	99	Right-handed alpha
Helix 104	AL5	F	99	112	Right-handed alpha
Helix 105	AL6	F	114	121	Right-handed alpha
Helix 106	AL7	F	121	137	Right-handed alpha
Helix 107	AL8	F	138	140	Right-handed 310
Helix 108	AL9	F	171	186	Right-handed alpha
Helix 109	AM1	F	199	213	Right-handed alpha
Helix 110	AM2	F	228	236	Right-handed alpha
Helix 111	AM3	F	247	261	Right-handed alpha
Helix 112	AM4	F	283	297	Right-handed alpha
Helix 113	AM5	F	298	301	Right-handed 310
Helix 114	AM6	F	313	328	Right-handed alpha
Helix 115	AM7	F	347	364	Right-handed alpha
Helix 116	AM8	F	394	399	Right-handed alpha
Helix 117	AM9	F	413	423	Right-handed alpha
Helix 118	AN1	F	436	447	Right-handed alpha
Helix 119	AN2	F	469	471	Right-handed 310
Helix 120	AN3	F	478	484	Right-handed alpha
Helix 121	AN4	G	56	71	Right-handed alpha
Helix 122	AN5	G	75	80	Right-handed alpha
Helix 123	AN6	G	81	99	Right-handed alpha
Helix 124	AN7	G	99	112	Right-handed alpha
Helix 125	AN8	G	114	121	Right-handed alpha
Helix 126	AN9	G	121	137	Right-handed alpha
Helix 127	AO1	G	138	140	Right-handed 310
Helix 128	AO2	G	171	186	Right-handed alpha
Helix 129	AO3	G	199	213	Right-handed alpha
Helix 130	AO4	G	228	235	Right-handed alpha
Helix 131	AO5	G	247	261	Right-handed alpha
Helix 132	AO6	G	283	297	Right-handed alpha
Helix 133	AO7	G	298	301	Right-handed 310
Helix 134	AO8	G	313	328	Right-handed alpha
Helix 135	AO9	G	347	364	Right-handed alpha
Helix 136	AP1	G	394	399	Right-handed alpha
Helix 137	AP2	G	413	423	Right-handed alpha
Helix 138	AP3	G	436	447	Right-handed alpha
Helix 139	AP4	G	469	471	Right-handed 310
Helix 140	AP5	G	478	484	Right-handed alpha
Helix 141	AP6	H	56	71	Right-handed alpha
Helix 142	AP7	H	75	80	Right-handed alpha
Helix 143	AP8	H	81	99	Right-handed alpha
Helix 144	AP9	H	99	112	Right-handed alpha
Helix 145	AQ1	H	114	121	Right-handed alpha
Helix 146	AQ2	H	121	137	Right-handed alpha
Helix 147	AQ3	H	138	140	Right-handed 310
Helix 148	AQ4	H	171	186	Right-handed alpha
Helix 149	AQ5	H	199	213	Right-handed alpha
Helix 150	AQ6	H	228	235	Right-handed alpha
Helix 151	AQ7	H	247	261	Right-handed alpha
Helix 152	AQ8	H	283	297	Right-handed alpha
Helix 153	AQ9	H	298	301	Right-handed 310
Helix 154	AR1	H	313	328	Right-handed alpha
Helix 155	AR2	H	347	364	Right-handed alpha
Helix 156	AR3	H	394	399	Right-handed alpha
Helix 157	AR4	H	413	423	Right-handed alpha
Helix 158	AR5	H	436	447	Right-handed alpha
Helix 159	AR6	H	469	471	Right-handed 310
Helix 160	AR7	H	478	484	Right-handed alpha

There are 36 sheets in PDB entry 5L2O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	28	30	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	41	first strand
Strand 2	A	48	53	anti-parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	370	first strand
Strand 2	B	385	388	anti-parallel
Strand 3	B	405	411	parallel
Strand 4	B	308	312	parallel
Strand 5	B	275	278	parallel
Strand 6	B	429	433	parallel
Strand 7	B	451	454	parallel
Strand 8	A	487	495	parallel
Strand 9	A	151	159	anti-parallel
Strand 10	A	142	145	anti-parallel
Strand 11	D	142	145	anti-parallel
Strand 12	D	151	159	anti-parallel
Strand 13	D	487	495	anti-parallel
Strand 14	C	451	454	parallel
Strand 15	C	429	433	parallel
Strand 16	C	275	278	parallel
Strand 17	C	308	312	parallel
Strand 18	C	405	411	parallel
Strand 19	C	385	388	parallel
Strand 20	C	367	370	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	221	first strand
Strand 2	A	189	193	parallel
Strand 3	A	162	166	parallel
Strand 4	A	241	245	parallel
Strand 5	A	265	269	parallel
Strand 6	A	473	474	anti-parallel

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There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	385	388	anti-parallel
Strand 3	A	405	411	parallel
Strand 4	A	308	312	parallel
Strand 5	A	275	278	parallel
Strand 6	A	429	433	parallel
Strand 7	A	451	454	parallel
Strand 8	B	487	495	parallel
Strand 9	B	151	159	anti-parallel
Strand 10	B	142	145	anti-parallel
Strand 11	C	142	145	anti-parallel
Strand 12	C	151	159	anti-parallel
Strand 13	C	487	495	anti-parallel
Strand 14	D	451	454	parallel
Strand 15	D	429	433	parallel
Strand 16	D	275	278	parallel
Strand 17	D	308	312	parallel
Strand 18	D	405	411	parallel
Strand 19	D	385	388	parallel
Strand 20	D	367	370	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	375	first strand
Strand 2	A	381	382	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	25	first strand
Strand 2	B	28	30	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	41	first strand
Strand 2	B	48	53	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	189	193	parallel
Strand 3	B	162	166	parallel
Strand 4	B	241	245	parallel
Strand 5	B	265	269	parallel
Strand 6	B	473	474	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	375	first strand
Strand 2	B	381	382	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	25	first strand
Strand 2	C	28	30	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	41	first strand
Strand 2	C	48	53	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	221	first strand
Strand 2	C	189	193	parallel
Strand 3	C	162	166	parallel
Strand 4	C	241	245	parallel
Strand 5	C	265	269	parallel
Strand 6	C	473	474	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	375	first strand
Strand 2	C	381	382	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	25	first strand
Strand 2	D	28	30	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	41	first strand
Strand 2	D	48	53	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	221	first strand
Strand 2	D	189	193	parallel
Strand 3	D	162	166	parallel
Strand 4	D	241	245	parallel
Strand 5	D	265	269	parallel
Strand 6	D	473	474	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	375	first strand
Strand 2	D	381	382	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	25	first strand
Strand 2	E	28	30	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	41	first strand
Strand 2	E	48	53	anti-parallel

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There are 20 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	367	370	first strand
Strand 2	F	385	388	anti-parallel
Strand 3	F	405	411	parallel
Strand 4	F	308	312	parallel
Strand 5	F	275	278	parallel
Strand 6	F	429	433	parallel
Strand 7	F	451	454	parallel
Strand 8	E	487	495	parallel
Strand 9	E	151	159	anti-parallel
Strand 10	E	142	145	anti-parallel
Strand 11	H	142	145	anti-parallel
Strand 12	H	151	159	anti-parallel
Strand 13	H	487	495	anti-parallel
Strand 14	G	451	454	parallel
Strand 15	G	429	433	parallel
Strand 16	G	275	278	parallel
Strand 17	G	308	312	parallel
Strand 18	G	405	411	parallel
Strand 19	G	385	388	parallel
Strand 20	G	367	370	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	219	221	first strand
Strand 2	E	189	193	parallel
Strand 3	E	162	166	parallel
Strand 4	E	241	245	parallel
Strand 5	E	265	269	parallel
Strand 6	E	473	474	anti-parallel

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There are 20 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	367	370	first strand
Strand 2	E	385	388	anti-parallel
Strand 3	E	405	411	parallel
Strand 4	E	308	312	parallel
Strand 5	E	275	278	parallel
Strand 6	E	429	433	parallel
Strand 7	E	451	454	parallel
Strand 8	F	487	495	parallel
Strand 9	F	151	159	anti-parallel
Strand 10	F	142	145	anti-parallel
Strand 11	G	142	145	anti-parallel
Strand 12	G	151	159	anti-parallel
Strand 13	G	487	495	anti-parallel
Strand 14	H	451	454	parallel
Strand 15	H	429	433	parallel
Strand 16	H	275	278	parallel
Strand 17	H	308	312	parallel
Strand 18	H	405	411	parallel
Strand 19	H	385	388	parallel
Strand 20	H	367	370	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	375	first strand
Strand 2	E	381	382	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	25	first strand
Strand 2	F	28	30	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	41	first strand
Strand 2	F	48	53	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	219	221	first strand
Strand 2	F	189	193	parallel
Strand 3	F	162	166	parallel
Strand 4	F	241	245	parallel
Strand 5	F	265	269	parallel
Strand 6	F	473	474	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	374	375	first strand
Strand 2	F	381	382	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	25	first strand
Strand 2	G	28	30	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	41	first strand
Strand 2	G	48	53	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	219	221	first strand
Strand 2	G	189	193	parallel
Strand 3	G	162	166	parallel
Strand 4	G	241	245	parallel
Strand 5	G	265	269	parallel
Strand 6	G	473	474	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	374	375	first strand
Strand 2	G	381	382	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	25	first strand
Strand 2	H	28	30	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	41	first strand
Strand 2	H	48	53	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	219	221	first strand
Strand 2	H	189	193	parallel
Strand 3	H	162	166	parallel
Strand 4	H	241	245	parallel
Strand 5	H	265	269	parallel
Strand 6	H	473	474	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	374	375	first strand
Strand 2	H	381	382	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L2O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L2O