Analysis of interatomic Contacts of Structural Units in PDB entry:
5L2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L2P entry

There are 4 chains in PDB entry 5L2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 306
B
 MET 1PHE 305
C
 MET 1LYS 306
D
 MET 1LYS 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5L2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 18Right-handed alpha
Helix 2
AA2
A
26 40Right-handed alpha
Helix 3
AA3
A
94 106Right-handed alpha
Helix 4
AA4
A
123 139Right-handed alpha
Helix 5
AA5
A
139 144Right-handed alpha
Helix 6
AA6
A
156 172Right-handed alpha
Helix 7
AA7
A
192 198Right-handed alpha
Helix 8
AA8
A
211 218Right-handed alpha
Helix 9
AA9
A
220 226Right-handed 310
Helix 10
AB1
A
230 234Right-handed 310
Helix 11
AB2
A
253 267Right-handed alpha
Helix 12
AB3
A
282 284Right-handed 310
Helix 13
AB4
A
286 306Right-handed alpha
Helix 14
AB5
B
4 18Right-handed alpha
Helix 15
AB6
B
26 40Right-handed alpha
Helix 16
AB7
B
94 106Right-handed alpha
Helix 17
AB8
B
123 139Right-handed alpha
Helix 18
AB9
B
139 144Right-handed alpha
Helix 19
AC1
B
146 148Right-handed 310
Helix 20
AC2
B
156 172Right-handed alpha
Helix 21
AC3
B
192 199Right-handed alpha
Helix 22
AC4
B
211 218Right-handed alpha
Helix 23
AC5
B
220 226Right-handed 310
Helix 24
AC6
B
230 234Right-handed 310
Helix 25
AC7
B
253 267Right-handed alpha
Helix 26
AC8
B
282 284Right-handed 310
Helix 27
AC9
B
286 305Right-handed alpha
Helix 28
AD1
C
4 18Right-handed alpha
Helix 29
AD2
C
26 40Right-handed alpha
Helix 30
AD3
C
94 106Right-handed alpha
Helix 31
AD4
C
123 139Right-handed alpha
Helix 32
AD5
C
139 144Right-handed alpha
Helix 33
AD6
C
156 172Right-handed alpha
Helix 34
AD7
C
192 199Right-handed alpha
Helix 35
AD8
C
211 218Right-handed alpha
Helix 36
AD9
C
220 226Right-handed 310
Helix 37
AE1
C
230 234Right-handed 310
Helix 38
AE2
C
253 267Right-handed alpha
Helix 39
AE3
C
280 284Right-handed 310
Helix 40
AE4
C
286 305Right-handed alpha
Helix 41
AE5
D
4 18Right-handed alpha
Helix 42
AE6
D
26 40Right-handed alpha
Helix 43
AE7
D
94 106Right-handed alpha
Helix 44
AE8
D
123 139Right-handed alpha
Helix 45
AE9
D
139 144Right-handed alpha
Helix 46
AF1
D
146 148Right-handed 310
Helix 47
AF2
D
156 172Right-handed alpha
Helix 48
AF3
D
192 199Right-handed alpha
Helix 49
AF4
D
211 218Right-handed alpha
Helix 50
AF5
D
220 226Right-handed 310
Helix 51
AF6
D
230 234Right-handed 310
Helix 52
AF7
D
253 267Right-handed alpha
Helix 53
AF8
D
282 284Right-handed 310
Helix 54
AF9
D
286 305Right-handed alpha
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There are 2 sheets in PDB entry 5L2P. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 56first strand
Strand 2
A
61 68anti-parallel
Strand 3
A
108 112anti-parallel
Strand 4
A
77 81parallel
Strand 5
A
150 155parallel
Strand 6
A
178 182parallel
Strand 7
A
242 250parallel
Strand 8
A
271 280parallel
Strand 9
B
271 280anti-parallel
Strand 10
B
242 250parallel
Strand 11
B
178 182parallel
Strand 12
B
150 155parallel
Strand 13
B
77 81parallel
Strand 14
B
108 112parallel
Strand 15
B
61 68anti-parallel
Strand 16
B
49 56anti-parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 56first strand
Strand 2
C
61 68anti-parallel
Strand 3
C
108 112anti-parallel
Strand 4
C
77 81parallel
Strand 5
C
150 155parallel
Strand 6
C
178 182parallel
Strand 7
C
242 248parallel
Strand 8
C
271 276parallel
Strand 9
D
271 280anti-parallel
Strand 10
D
242 250parallel
Strand 11
D
178 182parallel
Strand 12
D
150 155parallel
Strand 13
D
77 81parallel
Strand 14
D
108 112parallel
Strand 15
D
61 68anti-parallel
Strand 16
D
49 56anti-parallel
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