Analysis of interatomic Contacts of Structural Units in PDB entry:
5L2Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L2Q entry

There are 4 chains in PDB entry 5L2Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LEU 37	TRP 335
B	LYS 30	GLN 336
A	GLY 26	GLN 336
D	LYS 30	GLN 336

There are 38 helices in PDB entry 5L2Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	80	98	Right-handed alpha
Helix 2	AA2	C	99	101	Right-handed 310
Helix 3	AA3	C	151	156	Right-handed 310
Helix 4	AA4	C	159	165	Right-handed alpha
Helix 5	AA5	C	170	191	Right-handed alpha
Helix 6	AA6	C	199	201	Right-handed 310
Helix 7	AA7	C	241	246	Right-handed alpha
Helix 8	AA8	C	251	270	Right-handed alpha
Helix 9	AA9	C	278	289	Right-handed alpha
Helix 10	AB1	C	300	311	Right-handed alpha
Helix 11	AB2	C	320	334	Right-handed alpha
Helix 12	AB3	B	81	99	Right-handed alpha
Helix 13	AB4	B	159	167	Right-handed alpha
Helix 14	AB5	B	170	191	Right-handed alpha
Helix 15	AB6	B	199	201	Right-handed 310
Helix 16	AB7	B	241	246	Right-handed alpha
Helix 17	AB8	B	251	270	Right-handed alpha
Helix 18	AB9	B	278	288	Right-handed alpha
Helix 19	AC1	B	300	311	Right-handed alpha
Helix 20	AC2	B	320	335	Right-handed alpha
Helix 21	AC3	A	81	98	Right-handed alpha
Helix 22	AC4	A	159	166	Right-handed alpha
Helix 23	AC5	A	170	191	Right-handed alpha
Helix 24	AC6	A	199	201	Right-handed 310
Helix 25	AC7	A	243	247	Right-handed 310
Helix 26	AC8	A	252	270	Right-handed alpha
Helix 27	AC9	A	278	287	Right-handed alpha
Helix 28	AD1	A	300	311	Right-handed alpha
Helix 29	AD2	A	320	334	Right-handed alpha
Helix 30	AD3	D	83	98	Right-handed alpha
Helix 31	AD4	D	159	166	Right-handed alpha
Helix 32	AD5	D	170	191	Right-handed alpha
Helix 33	AD6	D	199	201	Right-handed 310
Helix 34	AD7	D	241	246	Right-handed alpha
Helix 35	AD8	D	251	270	Right-handed alpha
Helix 36	AD9	D	278	289	Right-handed alpha
Helix 37	AE1	D	303	311	Right-handed alpha
Helix 38	AE2	D	320	335	Right-handed alpha

There are 14 sheets in PDB entry 5L2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	64	69	anti-parallel
Strand 3	C	136	141	anti-parallel
Strand 4	C	109	115	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	203	205	anti-parallel
Strand 3	C	212	214	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	194	first strand
Strand 2	C	221	222	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	40	first strand
Strand 2	B	49	56	anti-parallel
Strand 3	B	62	69	anti-parallel
Strand 4	B	136	142	anti-parallel
Strand 5	B	109	115	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	203	206	anti-parallel
Strand 3	B	212	214	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	221	222	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	49	56	anti-parallel
Strand 4	A	62	70	anti-parallel
Strand 5	A	135	142	anti-parallel
Strand 6	A	109	114	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	158	first strand
Strand 2	A	203	206	anti-parallel
Strand 3	A	212	214	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	221	222	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	250	251	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	40	first strand
Strand 2	D	49	56	anti-parallel
Strand 3	D	62	69	anti-parallel
Strand 4	D	135	141	anti-parallel
Strand 5	D	109	116	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	122	first strand
Strand 2	D	129	131	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	203	206	anti-parallel
Strand 3	D	211	214	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	194	first strand
Strand 2	D	221	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L2Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L2Q