Analysis of interatomic Contacts of Structural Units in PDB entry:
5L35

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L35 entry

There are 4 chains in PDB entry 5L35 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	PRO 423
B	PRO 2	PRO 423
C	PRO 2	PRO 423
D	PRO 2	LYS 51

There are 73 helices in PDB entry 5L35. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	31	Right-handed alpha
Helix 2	AA2	A	95	101	Right-handed alpha
Helix 3	AA3	A	104	110	Right-handed alpha
Helix 4	AA4	A	112	132	Right-handed alpha
Helix 5	AA5	A	145	160	Right-handed alpha
Helix 6	AA6	A	171	183	Right-handed alpha
Helix 7	AA7	A	188	199	Right-handed alpha
Helix 8	AA8	A	237	242	Right-handed alpha
Helix 9	AA9	A	323	327	Right-handed 310
Helix 10	AB1	A	412	414	Right-handed 310
Helix 11	AB2	B	5	9	Right-handed 310
Helix 12	AB3	B	26	31	Right-handed alpha
Helix 13	AB4	B	33	37	Right-handed 310
Helix 14	AB5	B	95	101	Right-handed alpha
Helix 15	AB6	B	104	109	Right-handed alpha
Helix 16	AB7	B	110	132	Right-handed alpha
Helix 17	AB8	B	146	160	Right-handed alpha
Helix 18	AB9	B	171	183	Right-handed alpha
Helix 19	AC1	B	188	198	Right-handed alpha
Helix 20	AC2	B	237	242	Right-handed alpha
Helix 21	AC3	B	323	327	Right-handed 310
Helix 22	AC4	B	412	414	Right-handed 310
Helix 23	AC5	C	5	9	Right-handed 310
Helix 24	AC6	C	26	31	Right-handed alpha
Helix 25	AC7	C	95	101	Right-handed alpha
Helix 26	AC8	C	104	109	Right-handed alpha
Helix 27	AC9	C	111	130	Right-handed alpha
Helix 28	AD1	C	146	160	Right-handed alpha
Helix 29	AD2	C	171	183	Right-handed alpha
Helix 30	AD3	C	188	199	Right-handed alpha
Helix 31	AD4	C	323	327	Right-handed 310
Helix 32	AD5	C	412	414	Right-handed 310
Helix 33	AD6	D	26	31	Right-handed alpha
Helix 34	AD7	D	95	101	Right-handed alpha
Helix 35	AD8	D	104	109	Right-handed alpha
Helix 36	AD9	D	110	132	Right-handed alpha
Helix 37	AE1	D	145	160	Right-handed alpha
Helix 38	AE2	D	171	183	Right-handed alpha
Helix 39	AE3	D	188	199	Right-handed alpha
Helix 40	AE4	D	237	242	Right-handed alpha
Helix 41	AE5	D	323	327	Right-handed 310
Helix 42	AE6	D	412	414	Right-handed 310
Helix 43	AE7	E	5	9	Right-handed 310
Helix 44	AE8	E	26	31	Right-handed alpha
Helix 45	AE9	E	94	101	Right-handed alpha
Helix 46	AF1	E	104	109	Right-handed alpha
Helix 47	AF2	E	112	132	Right-handed alpha
Helix 48	AF3	E	145	160	Right-handed alpha
Helix 49	AF4	E	171	183	Right-handed alpha
Helix 50	AF5	E	188	198	Right-handed alpha
Helix 51	AF6	E	237	242	Right-handed alpha
Helix 52	AF7	E	323	327	Right-handed 310
Helix 53	AF8	E	412	414	Right-handed 310
Helix 54	AF9	F	26	31	Right-handed alpha
Helix 55	AG1	F	95	102	Right-handed alpha
Helix 56	AG2	F	104	109	Right-handed alpha
Helix 57	AG3	F	111	132	Right-handed alpha
Helix 58	AG4	F	145	160	Right-handed alpha
Helix 59	AG5	F	171	183	Right-handed alpha
Helix 60	AG6	F	188	198	Right-handed alpha
Helix 61	AG7	F	237	242	Right-handed alpha
Helix 62	AG8	F	323	327	Right-handed 310
Helix 63	AG9	F	412	414	Right-handed 310
Helix 64	AH1	G	25	31	Right-handed alpha
Helix 65	AH2	G	95	101	Right-handed alpha
Helix 66	AH3	G	104	109	Right-handed alpha
Helix 67	AH4	G	110	132	Right-handed alpha
Helix 68	AH5	G	145	160	Right-handed alpha
Helix 69	AH6	G	173	180	Right-handed alpha
Helix 70	AH7	G	197	201	Right-handed 310
Helix 71	AH8	G	237	242	Right-handed alpha
Helix 72	AH9	G	323	327	Right-handed 310
Helix 73	AI1	G	412	414	Right-handed 310

There are 44 sheets in PDB entry 5L35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	17	first strand
Strand 2	B	48	51	parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	406	410	anti-parallel
Strand 5	B	360	364	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	364	first strand
Strand 2	A	406	410	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	48	51	anti-parallel
Strand 5	F	13	17	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	F	86	94	anti-parallel
Strand 3	F	397	404	anti-parallel
Strand 4	F	383	391	anti-parallel
Strand 5	F	374	380	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	377	first strand
Strand 2	A	386	392	anti-parallel
Strand 3	A	397	404	anti-parallel
Strand 4	A	86	94	anti-parallel
Strand 5	B	59	61	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand
Strand 2	A	416	419	parallel
Strand 3	A	352	356	anti-parallel
Strand 4	A	166	170	anti-parallel
Strand 5	A	209	212	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	A	348	349	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	230	first strand
Strand 2	A	246	252	anti-parallel
Strand 3	A	308	314	anti-parallel
Strand 4	A	292	297	anti-parallel
Strand 5	A	267	274	anti-parallel
Strand 6	A	338	341	anti-parallel
Strand 7	A	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	262	first strand
Strand 2	A	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	286	first strand
Strand 2	A	289	290	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	17	first strand
Strand 2	C	48	51	parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	406	410	anti-parallel
Strand 5	C	360	364	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	94	first strand
Strand 2	B	397	404	anti-parallel
Strand 3	B	384	392	anti-parallel
Strand 4	B	374	379	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	136	first strand
Strand 2	B	416	419	parallel
Strand 3	B	352	356	anti-parallel
Strand 4	B	166	170	anti-parallel
Strand 5	B	208	212	parallel
Strand 6	B	204	205	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	B	348	349	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	230	first strand
Strand 2	B	246	252	anti-parallel
Strand 3	B	308	314	anti-parallel
Strand 4	B	292	297	anti-parallel
Strand 5	B	267	274	anti-parallel
Strand 6	B	338	341	anti-parallel
Strand 7	B	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	262	first strand
Strand 2	B	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	286	first strand
Strand 2	B	289	290	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	17	first strand
Strand 2	D	47	51	parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	406	410	anti-parallel
Strand 5	D	360	364	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	379	first strand
Strand 2	C	384	392	anti-parallel
Strand 3	C	397	404	anti-parallel
Strand 4	C	86	94	anti-parallel
Strand 5	D	59	61	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	C	416	419	parallel
Strand 3	C	352	356	anti-parallel
Strand 4	C	166	170	anti-parallel
Strand 5	C	209	212	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	348	349	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	230	first strand
Strand 2	C	246	252	anti-parallel
Strand 3	C	308	314	anti-parallel
Strand 4	C	292	297	anti-parallel
Strand 5	C	267	274	anti-parallel
Strand 6	C	338	341	anti-parallel
Strand 7	C	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	17	first strand
Strand 2	E	47	51	parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	406	410	anti-parallel
Strand 5	E	360	364	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	94	first strand
Strand 2	D	397	404	anti-parallel
Strand 3	D	384	392	anti-parallel
Strand 4	D	374	379	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	416	419	parallel
Strand 3	D	352	356	anti-parallel
Strand 4	D	166	170	anti-parallel
Strand 5	D	208	212	parallel
Strand 6	D	204	205	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	220	first strand
Strand 2	D	348	349	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	230	first strand
Strand 2	D	246	252	anti-parallel
Strand 3	D	308	314	anti-parallel
Strand 4	D	292	297	anti-parallel
Strand 5	D	267	274	anti-parallel
Strand 6	D	338	341	anti-parallel
Strand 7	D	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	262	first strand
Strand 2	D	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	285	286	first strand
Strand 2	D	289	290	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	17	first strand
Strand 2	F	47	51	parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	406	410	anti-parallel
Strand 5	F	360	364	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	379	first strand
Strand 2	E	384	391	anti-parallel
Strand 3	E	398	404	anti-parallel
Strand 4	E	86	93	anti-parallel
Strand 5	F	59	61	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	136	first strand
Strand 2	E	416	419	parallel
Strand 3	E	352	356	anti-parallel
Strand 4	E	166	170	anti-parallel
Strand 5	E	208	212	parallel
Strand 6	E	204	205	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	219	220	first strand
Strand 2	E	348	349	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	229	230	first strand
Strand 2	E	246	252	anti-parallel
Strand 3	E	308	314	anti-parallel
Strand 4	E	303	304	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	229	230	first strand
Strand 2	E	246	252	anti-parallel
Strand 3	E	308	314	anti-parallel
Strand 4	E	292	297	anti-parallel
Strand 5	E	267	274	anti-parallel
Strand 6	E	339	341	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	285	286	first strand
Strand 2	E	289	290	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	136	first strand
Strand 2	F	416	419	parallel
Strand 3	F	352	356	anti-parallel
Strand 4	F	166	170	anti-parallel
Strand 5	F	209	212	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	219	220	first strand
Strand 2	F	348	349	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	228	230	first strand
Strand 2	F	246	252	anti-parallel
Strand 3	F	310	314	anti-parallel
Strand 4	F	292	297	anti-parallel
Strand 5	F	267	274	anti-parallel
Strand 6	F	338	341	anti-parallel
Strand 7	F	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	258	262	first strand
Strand 2	F	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	51	first strand
Strand 2	G	78	83	anti-parallel
Strand 3	G	397	410	anti-parallel
Strand 4	G	360	365	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	94	first strand
Strand 2	G	397	410	anti-parallel
Strand 3	G	384	392	anti-parallel
Strand 4	G	374	379	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	136	first strand
Strand 2	G	416	419	parallel
Strand 3	G	352	356	anti-parallel
Strand 4	G	166	170	anti-parallel
Strand 5	G	208	212	parallel
Strand 6	G	192	195	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	219	220	first strand
Strand 2	G	348	349	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	229	230	first strand
Strand 2	G	246	252	anti-parallel
Strand 3	G	308	314	anti-parallel
Strand 4	G	292	297	anti-parallel
Strand 5	G	267	274	anti-parallel
Strand 6	G	339	341	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L35

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L35