Analysis of interatomic Contacts of Structural Units in PDB entry:
5L39

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L39 entry

There are 6 chains in PDB entry 5L39 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	GLU 209
B	ALA 2	HIS 210
C	ALA 2	GLY 201
D	ALA 2	GLY 201
E	ALA 2	LEU 199
F	ALA 2	LYS 203

There are 49 helices in PDB entry 5L39. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	25	Right-handed alpha
Helix 2	AA2	A	43	45	Right-handed 310
Helix 3	AA3	A	46	58	Right-handed alpha
Helix 4	AA4	A	79	94	Right-handed alpha
Helix 5	AA5	A	97	101	Right-handed 310
Helix 6	AA6	A	116	127	Right-handed alpha
Helix 7	AA7	A	147	160	Right-handed alpha
Helix 8	AA8	A	181	201	Right-handed alpha
Helix 9	AA9	A	203	209	Right-handed alpha
Helix 10	AB1	B	14	25	Right-handed alpha
Helix 11	AB2	B	45	56	Right-handed alpha
Helix 12	AB3	B	79	94	Right-handed alpha
Helix 13	AB4	B	97	101	Right-handed 310
Helix 14	AB5	B	116	127	Right-handed alpha
Helix 15	AB6	B	145	147	Right-handed 310
Helix 16	AB7	B	148	160	Right-handed alpha
Helix 17	AB8	B	181	201	Right-handed alpha
Helix 18	AB9	B	203	209	Right-handed alpha
Helix 19	AC1	C	14	20	Right-handed alpha
Helix 20	AC2	C	45	58	Right-handed alpha
Helix 21	AC3	C	79	94	Right-handed alpha
Helix 22	AC4	C	97	101	Right-handed 310
Helix 23	AC5	C	116	125	Right-handed alpha
Helix 24	AC6	C	145	147	Right-handed 310
Helix 25	AC7	C	148	160	Right-handed alpha
Helix 26	AC8	C	181	199	Right-handed alpha
Helix 27	AC9	D	14	22	Right-handed alpha
Helix 28	AD1	D	45	55	Right-handed alpha
Helix 29	AD2	D	79	95	Right-handed alpha
Helix 30	AD3	D	116	127	Right-handed alpha
Helix 31	AD4	D	145	147	Right-handed 310
Helix 32	AD5	D	148	160	Right-handed alpha
Helix 33	AD6	D	181	196	Right-handed alpha
Helix 34	AD7	E	14	20	Right-handed alpha
Helix 35	AD8	E	29	33	Right-handed 310
Helix 36	AD9	E	45	56	Right-handed alpha
Helix 37	AE1	E	79	95	Right-handed alpha
Helix 38	AE2	E	97	101	Right-handed 310
Helix 39	AE3	E	116	125	Right-handed alpha
Helix 40	AE4	E	145	147	Right-handed 310
Helix 41	AE5	E	148	160	Right-handed alpha
Helix 42	AE6	E	181	199	Right-handed alpha
Helix 43	AE7	F	14	23	Right-handed alpha
Helix 44	AE8	F	45	58	Right-handed alpha
Helix 45	AE9	F	79	94	Right-handed alpha
Helix 46	AF1	F	116	127	Right-handed alpha
Helix 47	AF2	F	145	147	Right-handed 310
Helix 48	AF3	F	148	160	Right-handed alpha
Helix 49	AF4	F	181	201	Right-handed alpha

There are 12 sheets in PDB entry 5L39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	10	first strand
Strand 2	A	35	42	anti-parallel
Strand 3	A	72	78	anti-parallel
Strand 4	A	61	67	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	112	first strand
Strand 2	A	137	144	anti-parallel
Strand 3	A	174	180	anti-parallel
Strand 4	A	163	168	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	10	first strand
Strand 2	B	35	42	anti-parallel
Strand 3	B	72	78	anti-parallel
Strand 4	B	61	67	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	112	first strand
Strand 2	B	137	144	anti-parallel
Strand 3	B	174	180	anti-parallel
Strand 4	B	163	168	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	10	first strand
Strand 2	C	35	42	anti-parallel
Strand 3	C	72	78	anti-parallel
Strand 4	C	61	67	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	112	first strand
Strand 2	C	137	144	anti-parallel
Strand 3	C	174	180	anti-parallel
Strand 4	C	163	168	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	10	first strand
Strand 2	D	35	42	anti-parallel
Strand 3	D	72	78	anti-parallel
Strand 4	D	61	67	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	112	first strand
Strand 2	D	137	144	anti-parallel
Strand 3	D	174	180	anti-parallel
Strand 4	D	163	168	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	10	first strand
Strand 2	E	35	42	anti-parallel
Strand 3	E	72	78	anti-parallel
Strand 4	E	61	67	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	112	first strand
Strand 2	E	137	144	anti-parallel
Strand 3	E	174	180	anti-parallel
Strand 4	E	163	168	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	10	first strand
Strand 2	F	35	42	anti-parallel
Strand 3	F	72	78	anti-parallel
Strand 4	F	61	67	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	105	112	first strand
Strand 2	F	137	144	anti-parallel
Strand 3	F	174	180	anti-parallel
Strand 4	F	163	168	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L39

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L39