Analysis of interatomic Contacts of Structural Units in PDB entry:
5L3Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L3Q entry

There are 4 chains in PDB entry 5L3Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 24GLY 296
B
 SER 332ALA 638
C
 ASN 24GLY 296
D
 SER 332ALA 638
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5L3Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 42Right-handed alpha
Helix 2
AA2
A
45 59Right-handed alpha
Helix 3
AA3
A
71 75Right-handed alpha
Helix 4
AA4
A
75 88Right-handed alpha
Helix 5
AA5
A
113 128Right-handed alpha
Helix 6
AA6
A
143 155Right-handed alpha
Helix 7
AA7
A
167 181Right-handed alpha
Helix 8
AA8
A
198 213Right-handed alpha
Helix 9
AA9
A
228 240Right-handed alpha
Helix 10
AB1
A
257 267Right-handed alpha
Helix 11
AB2
A
286 296Right-handed alpha
Helix 12
AB3
B
334 352Right-handed alpha
Helix 13
AB4
B
355 371Right-handed alpha
Helix 14
AB5
B
380 398Right-handed alpha
Helix 15
AB6
B
404 415Right-handed alpha
Helix 16
AB7
B
430 445Right-handed alpha
Helix 17
AB8
B
460 476Right-handed alpha
Helix 18
AB9
B
477 481Right-handed 310
Helix 19
AC1
B
497 513Right-handed alpha
Helix 20
AC2
B
528 543Right-handed alpha
Helix 21
AC3
B
557 573Right-handed alpha
Helix 22
AC4
B
589 593Right-handed 310
Helix 23
AC5
B
598 607Right-handed alpha
Helix 24
AC6
B
627 638Right-handed alpha
Helix 25
AC7
C
25 41Right-handed alpha
Helix 26
AC8
C
45 59Right-handed alpha
Helix 27
AC9
C
73 88Right-handed alpha
Helix 28
AD1
C
113 128Right-handed alpha
Helix 29
AD2
C
143 155Right-handed alpha
Helix 30
AD3
C
167 181Right-handed alpha
Helix 31
AD4
C
198 213Right-handed alpha
Helix 32
AD5
C
228 240Right-handed alpha
Helix 33
AD6
C
258 267Right-handed alpha
Helix 34
AD7
C
286 296Right-handed alpha
Helix 35
AD8
D
334 352Right-handed alpha
Helix 36
AD9
D
355 371Right-handed alpha
Helix 37
AE1
D
380 398Right-handed alpha
Helix 38
AE2
D
404 415Right-handed alpha
Helix 39
AE3
D
430 445Right-handed alpha
Helix 40
AE4
D
460 476Right-handed alpha
Helix 41
AE5
D
477 481Right-handed 310
Helix 42
AE6
D
497 513Right-handed alpha
Helix 43
AE7
D
528 543Right-handed alpha
Helix 44
AE8
D
557 573Right-handed alpha
Helix 45
AE9
D
589 593Right-handed 310
Helix 46
AF1
D
598 607Right-handed alpha
Helix 47
AF2
D
627 637Right-handed alpha
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There are 4 sheets in PDB entry 5L3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
132 137parallel
Strand 3
A
186 191parallel
Strand 4
A
102 107parallel
Strand 5
A
216 222parallel
Strand 6
A
242 248parallel
Strand 7
A
270 274parallel
Strand 8
A
282 284anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
487 490first strand
Strand 2
B
449 454parallel
Strand 3
B
516 521parallel
Strand 4
B
419 424parallel
Strand 5
B
546 552parallel
Strand 6
B
584 588parallel
Strand 7
B
611 615parallel
Strand 8
B
623 624anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 160first strand
Strand 2
C
132 137parallel
Strand 3
C
186 191parallel
Strand 4
C
102 107parallel
Strand 5
C
216 222parallel
Strand 6
C
244 248parallel
Strand 7
C
270 274parallel
Strand 8
C
282 284anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
487 490first strand
Strand 2
D
449 454parallel
Strand 3
D
516 521parallel
Strand 4
D
419 424parallel
Strand 5
D
546 552parallel
Strand 6
D
584 588parallel
Strand 7
D
611 615parallel
Strand 8
D
623 624anti-parallel
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