Analysis of interatomic Contacts of Structural Units in PDB entry:
5L3R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L3R entry

There are 4 chains in PDB entry 5L3R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 100GLY 371
B
 HIS 77SER 366
C
 VAL 97LEU 370
D
 HIS 78SER 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5L3R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
103 117Right-handed alpha
Helix 2
AA2
A
120 139Right-handed alpha
Helix 3
AA3
A
146 162Right-handed alpha
Helix 4
AA4
A
188 202Right-handed alpha
Helix 5
AA5
A
218 231Right-handed alpha
Helix 6
AA6
A
242 257Right-handed alpha
Helix 7
AA7
A
273 288Right-handed alpha
Helix 8
AA8
A
303 315Right-handed alpha
Helix 9
AA9
A
332 342Right-handed alpha
Helix 10
AB1
A
361 370Right-handed alpha
Helix 11
AB2
B
79 86Right-handed alpha
Helix 12
AB3
B
87 88Right-handed 310
Helix 13
AB4
B
89 91Right-handed 310
Helix 14
AB5
B
92 107Right-handed alpha
Helix 15
AB6
B
110 127Right-handed alpha
Helix 16
AB7
B
132 149Right-handed alpha
Helix 17
AB8
B
176 191Right-handed alpha
Helix 18
AB9
B
206 219Right-handed alpha
Helix 19
AC1
B
231 246Right-handed alpha
Helix 20
AC2
B
262 278Right-handed alpha
Helix 21
AC3
B
298 311Right-handed alpha
Helix 22
AC4
B
328 337Right-handed alpha
Helix 23
AC5
B
356 365Right-handed alpha
Helix 24
AC6
C
99 117Right-handed alpha
Helix 25
AC7
C
120 139Right-handed alpha
Helix 26
AC8
C
146 162Right-handed alpha
Helix 27
AC9
C
188 202Right-handed alpha
Helix 28
AD1
C
218 231Right-handed alpha
Helix 29
AD2
C
242 257Right-handed alpha
Helix 30
AD3
C
273 288Right-handed alpha
Helix 31
AD4
C
303 315Right-handed alpha
Helix 32
AD5
C
332 342Right-handed alpha
Helix 33
AD6
C
361 370Right-handed alpha
Helix 34
AD7
D
79 86Right-handed alpha
Helix 35
AD8
D
87 88Right-handed 310
Helix 36
AD9
D
89 91Right-handed 310
Helix 37
AE1
D
92 107Right-handed alpha
Helix 38
AE2
D
110 127Right-handed alpha
Helix 39
AE3
D
132 149Right-handed alpha
Helix 40
AE4
D
176 191Right-handed alpha
Helix 41
AE5
D
206 219Right-handed alpha
Helix 42
AE6
D
231 246Right-handed alpha
Helix 43
AE7
D
262 278Right-handed alpha
Helix 44
AE8
D
298 311Right-handed alpha
Helix 45
AE9
D
328 337Right-handed alpha
Helix 46
AF1
D
356 365Right-handed alpha
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There are 4 sheets in PDB entry 5L3R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
207 212parallel
Strand 3
A
261 266parallel
Strand 4
A
177 182parallel
Strand 5
A
291 297parallel
Strand 6
A
319 323parallel
Strand 7
A
345 349parallel
Strand 8
A
357 359anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 223first strand
Strand 2
B
195 198parallel
Strand 3
B
250 253parallel
Strand 4
B
165 171parallel
Strand 5
B
286 292parallel
Strand 6
B
314 318parallel
Strand 7
B
340 344parallel
Strand 8
B
352 354anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 235first strand
Strand 2
C
207 212parallel
Strand 3
C
261 266parallel
Strand 4
C
177 182parallel
Strand 5
C
291 297parallel
Strand 6
C
319 323parallel
Strand 7
C
345 349parallel
Strand 8
C
357 359anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
221 223first strand
Strand 2
D
195 200parallel
Strand 3
D
250 255parallel
Strand 4
D
165 170parallel
Strand 5
D
286 292parallel
Strand 6
D
314 318parallel
Strand 7
D
340 344parallel
Strand 8
D
352 354anti-parallel
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