Analysis of interatomic Contacts of Structural Units in PDB entry:
5L3S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L3S entry

There are 5 chains in PDB entry 5L3S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 16	LEU 292
B	LYS 86	SER 368
C	SER 16	LEU 292
D	GLU 92	SER 368
E	SER 16	GLU 195

There are 90 helices in PDB entry 5L3S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	37	Right-handed alpha
Helix 2	AA2	A	40	58	Right-handed alpha
Helix 3	AA3	A	66	81	Right-handed alpha
Helix 4	AA4	A	108	123	Right-handed alpha
Helix 5	AA5	A	138	151	Right-handed alpha
Helix 6	AA6	A	162	177	Right-handed alpha
Helix 7	AA7	A	192	194	Right-handed 310
Helix 8	AA8	A	195	210	Right-handed alpha
Helix 9	AA9	A	225	237	Right-handed alpha
Helix 10	AB1	A	253	264	Right-handed alpha
Helix 11	AB2	A	283	292	Right-handed alpha
Helix 12	AB3	B	91	109	Right-handed alpha
Helix 13	AB4	B	112	128	Right-handed alpha
Helix 14	AB5	B	137	158	Right-handed alpha
Helix 15	AB6	B	161	169	Right-handed alpha
Helix 16	AB7	B	185	200	Right-handed alpha
Helix 17	AB8	B	215	228	Right-handed alpha
Helix 18	AB9	B	239	254	Right-handed alpha
Helix 19	AC1	B	270	285	Right-handed alpha
Helix 20	AC2	B	299	312	Right-handed alpha
Helix 21	AC3	B	329	339	Right-handed alpha
Helix 22	AC4	B	358	368	Right-handed alpha
Helix 23	AC5	C	17	37	Right-handed alpha
Helix 24	AC6	C	40	58	Right-handed alpha
Helix 25	AC7	C	68	82	Right-handed alpha
Helix 26	AC8	C	108	123	Right-handed alpha
Helix 27	AC9	C	138	151	Right-handed alpha
Helix 28	AD1	C	162	177	Right-handed alpha
Helix 29	AD2	C	192	194	Right-handed 310
Helix 30	AD3	C	195	210	Right-handed alpha
Helix 31	AD4	C	225	237	Right-handed alpha
Helix 32	AD5	C	253	264	Right-handed alpha
Helix 33	AD6	C	283	292	Right-handed alpha
Helix 34	AD7	D	95	108	Right-handed alpha
Helix 35	AD8	D	112	128	Right-handed alpha
Helix 36	AD9	D	138	157	Right-handed alpha
Helix 37	AE1	D	161	168	Right-handed alpha
Helix 38	AE2	D	185	200	Right-handed alpha
Helix 39	AE3	D	215	228	Right-handed alpha
Helix 40	AE4	D	239	255	Right-handed alpha
Helix 41	AE5	D	270	285	Right-handed alpha
Helix 42	AE6	D	299	312	Right-handed alpha
Helix 43	AE7	D	329	339	Right-handed alpha
Helix 44	AE8	D	358	367	Right-handed alpha
Helix 45	AE9	E	17	37	Right-handed alpha
Helix 46	AF1	E	40	58	Right-handed alpha
Helix 47	AF2	E	67	83	Right-handed alpha
Helix 48	AF3	E	108	123	Right-handed alpha
Helix 49	AF4	E	138	151	Right-handed alpha
Helix 50	AF5	E	162	177	Right-handed alpha
Helix 51	AF6	E	192	194	Right-handed 310
Helix 52	AF7	E	195	210	Right-handed alpha
Helix 53	AF8	E	225	237	Right-handed alpha
Helix 54	AF9	E	253	264	Right-handed alpha
Helix 55	AG1	E	283	292	Right-handed alpha
Helix 56	AG2	F	91	109	Right-handed alpha
Helix 57	AG3	F	112	128	Right-handed alpha
Helix 58	AG4	F	137	158	Right-handed alpha
Helix 59	AG5	F	161	169	Right-handed alpha
Helix 60	AG6	F	185	200	Right-handed alpha
Helix 61	AG7	F	215	228	Right-handed alpha
Helix 62	AG8	F	239	255	Right-handed alpha
Helix 63	AG9	F	270	285	Right-handed alpha
Helix 64	AH1	F	299	312	Right-handed alpha
Helix 65	AH2	F	329	339	Right-handed alpha
Helix 66	AH3	F	358	367	Right-handed alpha
Helix 67	AH4	G	17	37	Right-handed alpha
Helix 68	AH5	G	40	58	Right-handed alpha
Helix 69	AH6	G	65	82	Right-handed alpha
Helix 70	AH7	G	108	123	Right-handed alpha
Helix 71	AH8	G	138	151	Right-handed alpha
Helix 72	AH9	G	162	177	Right-handed alpha
Helix 73	AI1	G	192	194	Right-handed 310
Helix 74	AI2	G	195	210	Right-handed alpha
Helix 75	AI3	G	225	237	Right-handed alpha
Helix 76	AI4	G	253	264	Right-handed alpha
Helix 77	AI5	G	283	292	Right-handed alpha
Helix 78	AI6	H	91	94	Right-handed 310
Helix 79	AI7	H	95	109	Right-handed alpha
Helix 80	AI8	H	112	128	Right-handed alpha
Helix 81	AI9	H	138	158	Right-handed alpha
Helix 82	AJ1	H	161	169	Right-handed alpha
Helix 83	AJ2	H	185	200	Right-handed alpha
Helix 84	AJ3	H	215	228	Right-handed alpha
Helix 85	AJ4	H	239	254	Right-handed alpha
Helix 86	AJ5	H	270	285	Right-handed alpha
Helix 87	AJ6	H	299	312	Right-handed alpha
Helix 88	AJ7	H	321	325	Right-handed 310
Helix 89	AJ8	H	329	339	Right-handed alpha
Helix 90	AJ9	H	358	367	Right-handed alpha

There are 10 sheets in PDB entry 5L3S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	156	first strand
Strand 2	A	127	131	parallel
Strand 3	A	181	185	parallel
Strand 4	A	97	102	parallel
Strand 5	A	213	219	parallel
Strand 6	A	241	245	parallel
Strand 7	A	266	271	parallel
Strand 8	A	279	281	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	131	133	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	232	first strand
Strand 2	B	204	209	parallel
Strand 3	B	258	263	parallel
Strand 4	B	174	179	parallel
Strand 5	B	288	294	parallel
Strand 6	B	316	320	parallel
Strand 7	B	342	346	parallel
Strand 8	B	354	356	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	127	132	parallel
Strand 3	C	181	186	parallel
Strand 4	C	97	102	parallel
Strand 5	C	213	219	parallel
Strand 6	C	241	245	parallel
Strand 7	C	266	271	parallel
Strand 8	C	279	281	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	232	first strand
Strand 2	D	204	209	parallel
Strand 3	D	258	263	parallel
Strand 4	D	174	179	parallel
Strand 5	D	288	294	parallel
Strand 6	D	316	320	parallel
Strand 7	D	342	346	parallel
Strand 8	D	354	356	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	156	first strand
Strand 2	E	127	131	parallel
Strand 3	E	181	185	parallel
Strand 4	E	97	102	parallel
Strand 5	E	213	219	parallel
Strand 6	E	241	245	parallel
Strand 7	E	266	271	parallel
Strand 8	E	279	281	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	89	first strand
Strand 2	F	131	132	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	230	232	first strand
Strand 2	F	204	209	parallel
Strand 3	F	258	263	parallel
Strand 4	F	174	179	parallel
Strand 5	F	288	294	parallel
Strand 6	F	316	320	parallel
Strand 7	F	342	346	parallel
Strand 8	F	354	356	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	153	155	first strand
Strand 2	G	127	131	parallel
Strand 3	G	181	185	parallel
Strand 4	G	97	102	parallel
Strand 5	G	213	219	parallel
Strand 6	G	241	245	parallel
Strand 7	G	266	271	parallel
Strand 8	G	279	281	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	230	232	first strand
Strand 2	H	204	209	parallel
Strand 3	H	258	263	parallel
Strand 4	H	174	179	parallel
Strand 5	H	288	294	parallel
Strand 6	H	316	320	parallel
Strand 7	H	342	346	parallel
Strand 8	H	354	356	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L3S

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L3S